View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9672_low_5 (Length: 484)

Name: NF9672_low_5
Description: NF9672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9672_low_5
NF9672_low_5
[»] chr2 (7 HSPs)
chr2 (18-287)||(10255008-10255277)
chr2 (18-96)||(10244396-10244474)
chr2 (364-469)||(10255354-10255455)
chr2 (34-81)||(10252901-10252948)
chr2 (26-81)||(10265514-10265569)
chr2 (76-112)||(10247930-10247966)
chr2 (191-231)||(20116508-20116548)
[»] chr6 (1 HSPs)
chr6 (190-287)||(19412031-19412122)
[»] chr7 (1 HSPs)
chr7 (190-272)||(7467334-7467410)
[»] chr4 (1 HSPs)
chr4 (233-271)||(31023077-31023115)


Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 10255008 - 10255277
Alignment:
Q  18 agtaatgcacttgagaactagtggagacattactgaacatgataaggcttgagtcaatctcaatctcaacatgctttatcatatcatggtgaatacggtt 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10255008 agtaatgtacttgagaactagtggagacattactgaacatgataaggcttgagtcaatctcaatctcaacatgctttatcatatcatggtgaatagggtt 10255107  T
Q  118 attattattctaattttgatttgtcgaagaacagtgaagctcatgtttgatagggaagtattcaagttgtttacactacaagaaaatatatgattttcta 217  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10255108 attattattctaattttgatttgtggaagaacagtgaagttcatgtttggtagggaagtattcaagatgtttacactacaagaaaatatatgattttcta 10255207  T
Q  218 ccatgattgtgctactgctaggaaatgtaatggtagtaaatatcataataattaataccaatttgactga 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10255208 ccatgattgtgctactgctaggaaatgtaatggtagtaaatatcataataattaataccaatttgactga 10255277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 10244396 - 10244474
Alignment:
Q  18 agtaatgcacttgagaactagtggagacattactgaacatgataaggcttgagtcaatctcaatctcaacatgctttat 96  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10244396 agtaatgtacttgagaactagtggagacattactgaacatgataaggcttgagtcaatctcaatctcaacatgctttat 10244474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 364 - 469
Target Start/End: Original strand, 10255354 - 10255455
Alignment:
Q  364 ctcaaacacatttctctttctgaaaacacactcgtggaactctcacttcagatctcatccacaccctccctcgccgtcacgcagaccgatctccaccgca 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    ||||||||||||| |  ||||||||||||||||    
T  10255354 ctcaaacacatttctctttctgaaaacacactcgtggaactctcacttcagatctcatcctca----ccctcgccgtcacacgcaccgatctccaccgca 10255449  T
Q  464 tctctg 469  Q
    ||||||    
T  10255450 tctctg 10255455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 10252901 - 10252948
Alignment:
Q  34 actagtggagacattactgaacatgataaggcttgagtcaatctcaat 81  Q
    |||||||||||||||  | |||||||| ||||||||||||||||||||    
T  10252901 actagtggagacattgttcaacatgatgaggcttgagtcaatctcaat 10252948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 10265514 - 10265569
Alignment:
Q  26 acttgagaactagtggagacattactgaacatgataaggcttgagtcaatctcaat 81  Q
    ||||||||||||   ||||| ||||| |||||||| ||||||||||||||||||||    
T  10265514 acttgagaactatgagagactttacttaacatgatgaggcttgagtcaatctcaat 10265569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 10247930 - 10247966
Alignment:
Q  76 ctcaatctcaacatgctttatcatatcatggtgaata 112  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  10247930 ctcaatctcaacatgctttatcctatcatgatgaata 10247966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 20116548 - 20116508
Alignment:
Q  191 cactacaagaaaatatatgattttctaccatgattgtgcta 231  Q
    ||||||||||||||||| |||||  ||||||||||||||||    
T  20116548 cactacaagaaaatataagatttggtaccatgattgtgcta 20116508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 190 - 287
Target Start/End: Complemental strand, 19412122 - 19412031
Alignment:
Q  190 acactacaagaaaatatatgattttctaccatgattgtgctactgctaggaaatgtaatggtagtaaatatcataataattaataccaatttgactga 287  Q
    |||||| ||||||||||| ||||| ||||||||||||||||       |||||||||||||||||||||||||||||||||||   ||||||||||||    
T  19412122 acactataagaaaatataagatttgctaccatgattgtgctc------ggaaatgtaatggtagtaaatatcataataattaactacaatttgactga 19412031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 190 - 272
Target Start/End: Original strand, 7467334 - 7467410
Alignment:
Q  190 acactacaagaaaatatatgattttctaccatgattgtgctactgctaggaaatgtaatggtagtaaatatcataataattaa 272  Q
    |||||||||||||||||  ||||| ||||||||||||||||      ||||||||||||||||||||||||||| ||||||||    
T  7467334 acactacaagaaaatatcagatttgctaccatgattgtgct------aggaaatgtaatggtagtaaatatcattataattaa 7467410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 31023115 - 31023077
Alignment:
Q  233 tgctaggaaatgtaatggtagtaaatatcataataatta 271  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  31023115 tgctaagaaatgtaatggtagtaaatattataataatta 31023077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University