View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9672_low_7 (Length: 471)
Name: NF9672_low_7
Description: NF9672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9672_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 47740235 - 47740693
Alignment:
| Q |
1 |
aagtaacactcttctaatcaagttggttgcaataactaaagtatcgatactttatttaaactggctatactacatattccttttcacaacgaccaattta |
100 |
Q |
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| T |
47740235 |
aagtaacactcttataattaagttggttgcaataactaaagtaccgatactttatttaaactggctatattgcatattccttttcacaacgaccaattta |
47740334 |
T |
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| Q |
101 |
gttgattattatcaatttcatgaagcattttgcacacaaatataaaatttcaactgaggtatttgctcataaatattaaaaaactccaaaata-nnnnnn |
199 |
Q |
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| T |
47740335 |
gttgattattatcaatttcatgaagcattttgcacacaagtataaaatttcaacggaggtatttgctcataactattaaaaaactccaaaatattttttt |
47740434 |
T |
|
| Q |
200 |
ncaaaaagaaaaagcaaatactccatgacatgtcataccatgtggtagtgtcatgtacatagtcaacaaccacatcatggttgtctaacgtttaacaatt |
299 |
Q |
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| T |
47740435 |
tcaaaaagaaaaagcaaatactccatgacatgtcataccatgtggtagtgtcatgtacatagtcaacaaccacgtcatgcttgtctaacgtttaacaatt |
47740534 |
T |
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| Q |
300 |
tcgtggg-nnnnnnnnnnnnnnnnnnnngaatttaagagaaatatttgcaaaattttacaatttcataaggtattttcctatttactctttaatcctctt |
398 |
Q |
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| T |
47740535 |
tcgtgggtttttttccttctttttttttgaatttcagaggaatatttgcaaaattttacaatttcataagttactttcctatttactctttaatcctctt |
47740634 |
T |
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| Q |
399 |
ttgttttccaacatgtaacgttttaaaggagaccattgtattagttatattagattttg |
457 |
Q |
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| T |
47740635 |
ttgttttccaacatgtaacgttttaaaggagaccattgtattagttatattagattttg |
47740693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 2668463 - 2668543
Alignment:
| Q |
92 |
accaatttagttgattattatcaatttcatgaagcattttgcacacaaatataaaatttcaactgaggtatttgctcataa |
172 |
Q |
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| T |
2668463 |
accaatttatttgattagtatcagtttcaagaggcattttgcacataattgtaaaattttaaaggcggtatttgctcataa |
2668543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 33831915 - 33831865
Alignment:
| Q |
102 |
ttgattattatcaatttcatgaagcattttgcacacaaatataaaatttca |
152 |
Q |
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| T |
33831915 |
ttgattattatcaactccatggagcattttgcacataaatgtaaaatttca |
33831865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 5874562 - 5874512
Alignment:
| Q |
102 |
ttgattattatcaatttcatgaagcattttgcacacaaatataaaatttca |
152 |
Q |
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| T |
5874562 |
ttgattattatcaatttcatggagtattttgcacataagtgtaaaatttca |
5874512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 17859196 - 17859130
Alignment:
| Q |
84 |
tcacaacgaccaatttagttgattattatcaatttcatgaagcattttgcacacaaatataaaattt |
150 |
Q |
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| T |
17859196 |
tcacaaggaccaatttgcttgattactatcaatttcatgaggtattttgcatataagtataaaattt |
17859130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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