View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9672_low_9 (Length: 377)
Name: NF9672_low_9
Description: NF9672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9672_low_9 |
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| [»] scaffold0008 (2 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 37 - 366
Target Start/End: Complemental strand, 63812 - 63478
Alignment:
| Q |
37 |
aacttccttcaacatatgcaactctttctaaaggttttattgttgtagtcattccttggcggtgctgcagcatcaggtgctctaacatcggctttgaggt |
136 |
Q |
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| T |
63812 |
aacttccttcaacatatgcaactctttctaaaggttttattgttgtagtctttccttggcggtgctgcagcatcaggtgctctaacatcggctttgaggt |
63713 |
T |
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| Q |
137 |
taattacaaaagcaatatttgaaaattctaaggacggtcttcgcaaaggagcgagtaagttcagcactctaatgcttagcatggaaacatcg-----gct |
231 |
Q |
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| T |
63712 |
taattacaaaagcaatatttgaaaattctaaagacggtcttcgcaaaggagcgagtaagttcagcactctaatgcttagcatggaaacatagaagtagtt |
63613 |
T |
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| Q |
232 |
ttgtctctatttctattcagttaattttgacaagaattgcttagcatataaattgatttcttttagtatctgttcctataattcataaagatatccatga |
331 |
Q |
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| T |
63612 |
ttgtctctatttctattcagttaattttgacaagaattgcttagcatgcaaattgatttcttttagtatcggttcctacaattcataaagatattcatga |
63513 |
T |
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| Q |
332 |
tcatgattcatgtggtatactgaatattcctctct |
366 |
Q |
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| T |
63512 |
tcatgattcatgtgttatactgaatattcctctct |
63478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 103 - 218
Target Start/End: Complemental strand, 51467 - 51353
Alignment:
| Q |
103 |
gcagcatcaggtgctctaacatcggctttgaggttaattacaaaagcaatatttgaaaattctaaggacggtcttcgcaaaggagcgagtaagttcagca |
202 |
Q |
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| T |
51467 |
gcagcctcaggtgcactaacatctgttttgaggttaatcacaaaagcaatatttgaaaattctaaggacggtcttcgcaaaggagcgagtaagtt-aaca |
51369 |
T |
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| Q |
203 |
ctctaatgcttagcat |
218 |
Q |
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| T |
51368 |
ctctaatgcttagcat |
51353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 31524115 - 31524230
Alignment:
| Q |
103 |
gcagcatcaggtgctctaacatcggctttgaggttaattacaaaagcaatatttgaaaattctaaggacggtcttcgcaaaggagcgagtaagttcagca |
202 |
Q |
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| T |
31524115 |
gcagcctcaggtgcactaacatctgttttgaggttaatcacaaaagcaatatttgaaaattctaaggacggtcttcgcaaaggagcgagtaagttcaaca |
31524214 |
T |
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| Q |
203 |
ctctaatgcttagcat |
218 |
Q |
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| T |
31524215 |
ctctaatgcttagcat |
31524230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 71 - 197
Target Start/End: Original strand, 21090345 - 21090471
Alignment:
| Q |
71 |
ttttattgttgtagtcattccttggcggtgctgcagcatcaggtgctctaacatcggctttgaggttaattacaaaagcaatatttgaaaattctaagga |
170 |
Q |
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||||||||||| |||| ||||||| ||| ||||||| || |||||||||||||| |||||||| |||||||||||||| | ||||| |||||| | |
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| T |
21090345 |
ttttattgttgcagtcgttccttgctggttctgcagcgtctggtgctctaacatcagctttgagattaattacaaaagccgtgtttgagaattctcctgg |
21090444 |
T |
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| Q |
171 |
cggtcttcgcaaaggagcgagtaagtt |
197 |
Q |
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| T |
21090445 |
tggtcttcgcaaaggagccagtaagtt |
21090471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 37854768 - 37854864
Alignment:
| Q |
103 |
gcagcatcaggtgctctaacatcggctttgaggttaattacaaaagcaatatttgaaaattctaaggacggtcttcgcaaaggagcgagtaagttca |
199 |
Q |
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| T |
37854768 |
gcagcatctggtgcattaacttctggtttaaggttaattacaaaagcagcatttgataattctaaggatggtcttagaaaaggagctagtaagttca |
37854864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 18097162 - 18097258
Alignment:
| Q |
103 |
gcagcatcaggtgctctaacatcggctttgaggttaattacaaaagcaatatttgaaaattctaaggacggtcttcgcaaaggagcgagtaagttca |
199 |
Q |
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| T |
18097162 |
gcagcatctggtgcattaacttctggtttaaggttaattacaaaagcagcatttgataattctaaggatggtcttagaaaaggagctagtaagttca |
18097258 |
T |
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