View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9673_low_1 (Length: 434)

Name: NF9673_low_1
Description: NF9673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9673_low_1
NF9673_low_1
[»] chr7 (13 HSPs)
chr7 (16-424)||(4328514-4328922)
chr7 (64-298)||(4316984-4317219)
chr7 (306-428)||(4316448-4316570)
chr7 (306-424)||(25033737-25033856)
chr7 (107-254)||(6712521-6712670)
chr7 (161-297)||(679492-679632)
chr7 (114-282)||(10018882-10019051)
chr7 (306-430)||(6711861-6711980)
chr7 (164-295)||(38877362-38877496)
chr7 (306-344)||(4541779-4541817)
chr7 (306-338)||(2325284-2325316)
chr7 (244-297)||(4983143-4983200)
chr7 (244-297)||(16076820-16076877)
[»] chr2 (10 HSPs)
chr2 (91-282)||(22578368-22578561)
chr2 (99-273)||(15027335-15027511)
chr2 (306-424)||(22577745-22577862)
chr2 (214-288)||(24023858-24023932)
chr2 (306-398)||(24018043-24018135)
chr2 (184-280)||(24018626-24018724)
chr2 (164-297)||(24371432-24371568)
chr2 (244-297)||(24824976-24825033)
chr2 (306-353)||(29952180-29952225)
chr2 (306-338)||(31590019-31590051)
[»] chr6 (15 HSPs)
chr6 (68-283)||(32796562-32796778)
chr6 (68-292)||(13168185-13168414)
chr6 (306-424)||(32795923-32796042)
chr6 (306-425)||(13168921-13169041)
chr6 (222-288)||(17522388-17522454)
chr6 (184-289)||(9414324-9414432)
chr6 (164-297)||(29682551-29682688)
chr6 (164-297)||(20222863-20223000)
chr6 (244-289)||(21237972-21238017)
chr6 (164-297)||(22116847-22116984)
chr6 (164-267)||(31965575-31965678)
chr6 (306-344)||(26822468-26822506)
chr6 (244-297)||(210132-210189)
chr6 (244-297)||(18448812-18448869)
chr6 (244-297)||(24218757-24218814)
[»] chr1 (6 HSPs)
chr1 (68-282)||(24679974-24680189)
chr1 (379-424)||(24680751-24680796)
chr1 (108-173)||(21918802-21918868)
chr1 (324-390)||(1869886-1869952)
chr1 (212-292)||(2129902-2129985)
chr1 (244-297)||(21784215-21784272)
[»] scaffold0035 (3 HSPs)
scaffold0035 (107-218)||(31206-31317)
scaffold0035 (99-256)||(31940-32097)
scaffold0035 (107-198)||(33374-33465)
[»] chr4 (11 HSPs)
chr4 (68-290)||(12347219-12347444)
chr4 (99-290)||(13883484-13883678)
chr4 (306-424)||(13882886-13883005)
chr4 (72-137)||(12506640-12506704)
chr4 (244-297)||(17168881-17168938)
chr4 (244-297)||(17174453-17174510)
chr4 (244-297)||(21102223-21102280)
chr4 (164-270)||(23793620-23793725)
chr4 (351-391)||(11048934-11048975)
chr4 (212-289)||(55267549-55267629)
chr4 (244-297)||(6518407-6518464)
[»] chr3 (3 HSPs)
chr3 (108-277)||(27992738-27992907)
chr3 (216-283)||(14826646-14826713)
chr3 (244-292)||(17023274-17023326)
[»] scaffold0855 (2 HSPs)
scaffold0855 (161-297)||(3423-3562)
scaffold0855 (306-373)||(4079-4149)
[»] scaffold0847 (2 HSPs)
scaffold0847 (161-297)||(3588-3727)
scaffold0847 (306-373)||(4244-4314)
[»] chr8 (5 HSPs)
chr8 (133-202)||(7465511-7465580)
chr8 (86-191)||(31469781-31469887)
chr8 (161-297)||(24221543-24221683)
chr8 (244-289)||(15634309-15634355)
chr8 (244-289)||(15636082-15636128)
[»] scaffold0157 (1 HSPs)
scaffold0157 (72-137)||(13773-13837)
[»] scaffold0088 (1 HSPs)
scaffold0088 (193-286)||(38481-38578)
[»] chr5 (1 HSPs)
chr5 (164-297)||(23029571-23029708)
[»] scaffold0094 (1 HSPs)
scaffold0094 (221-288)||(1630-1698)
[»] scaffold0014 (1 HSPs)
scaffold0014 (164-297)||(168155-168289)
[»] scaffold1323 (1 HSPs)
scaffold1323 (244-297)||(1898-1955)


Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 16 - 424
Target Start/End: Complemental strand, 4328922 - 4328514
Alignment:
16 agtatatgatatccagccccgttaaagacagacacggtccgtgcatgtacaggcacgaccgtgccaagtcccagactgctatgttttgttatttttcaga 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4328922 agtatatgatatccagccccgttaaagacagacacggtccgtgcctgtacaggcacgaccgtgccaagtcccagactgctatgttttgttatttttcaga 4328823  T
116 cccaaaagtccatgggttgcttgctatgtaatgtttgtaccttttttagggcttaagttagcttttaggctataaaaagagcagccaacaaacttattat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
4328822 cccaaaagtccatgggttgcttgctatgtaatgtttgtaccttttttagggcttaagttagcttttaggctataaaaagagcagccaacagacttattat 4328723  T
216 tcatcttttattattgggaattttccgcgacaattatttctttgaataaaagttcttattttcttgttatttatttttatgtcnnnnnnngaaccaataa 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
4328722 tcatcttttattattgggaattttccgcgacaattatttctttgaataaaagttcttattttcttgttatttatttttatgtctttttttgaaccaataa 4328623  T
316 tcccgaggcgctttttattattaattttatcaatcaaaaatccaaactttttaacctttaaactttcagctaatcacctttaaaaagagaatcacaatta 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4328622 tcccgaggcgctttttattattaattttatcaatcaaaaatccaaactttttaacctttaaactttcagctaatcacctttaaaaagagaatcacaatta 4328523  T
416 caacaactc 424  Q
    |||||||||    
4328522 caacaactc 4328514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 64 - 298
Target Start/End: Complemental strand, 4317219 - 4316984
Alignment:
64 acaggcacgaccgtgccaagtcccagactgctatgttttgttatttttcagacccaaaagtccatgggttgcttgctatgtaatgtttgtacctttt-tt 162  Q
    ||||||||||| |||||| ||||||| ||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| | |||||| ||    
4317219 acaggcacgactgtgccatgtcccaggctggtatgttttgttatttttcagacctaaaagcccatgggttgcttgatatgtaatgtttatgccttttctt 4317120  T
163 agggcttaagttagcttttaggctataaaaagagcagccaacaaacttattattcatcttttattattgggaattttccgcgacaattatttctttgaat 262  Q
    ||||||||||||| |||||||||| |||| |||||||||| || |||||||||||||||||| ||||||||||||||| | |||||||||||||||||||    
4317119 agggcttaagttaacttttaggctgtaaatagagcagccatcagacttattattcatcttttgttattgggaattttctgtgacaattatttctttgaat 4317020  T
263 aaaagttcttattttcttgttatttatttttatgtc 298  Q
    ||||||| ||| ||||||||||||||||||||||||    
4317019 aaaagtttttagtttcttgttatttatttttatgtc 4316984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 306 - 428
Target Start/End: Complemental strand, 4316570 - 4316448
Alignment:
306 gaaccaataatcccgaggcgctttttattattaattttatcaatcaaaaatccaaactttttaacctttaaactttcagctaatcacctttaaaaagaga 405  Q
    |||||||||||||| | |||||||||| |||||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||    
4316570 gaaccaataatcccaatgcgctttttaatattaattttatcaataaaaaacccaaactttataacctataaactttcagctaatcacctttaaaaagaga 4316471  T
406 atcacaattacaacaactctctg 428  Q
    |||||||||||||||||||||||    
4316470 atcacaattacaacaactctctg 4316448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 306 - 424
Target Start/End: Complemental strand, 25033856 - 25033737
Alignment:
306 gaaccaataatcccgaggcgctttttattattaatttta--tcaatcaaaaatccaaactttttaacctttaaactttcagctaatcacctttaaaaaga 403  Q
    ||||||||||||||||| ||||||||||| |||||||||  |||||||||| ||||||||||| || |||||| |||||||||||||||| |||||||||    
25033856 gaaccaataatcccgagacgctttttatttttaattttacatcaatcaaaa-tccaaacttttcaaactttaatctttcagctaatcaccgttaaaaaga 25033758  T
404 gaatcacaattacaacaactc 424  Q
    |||||| ||||||||||||||    
25033757 gaatcataattacaacaactc 25033737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 107 - 254
Target Start/End: Complemental strand, 6712670 - 6712521
Alignment:
107 tttttcagacccaaaagtccatgggttgcttgctatgtaatgtttgtacctttt-ttagggcttaagttagcttttaggctataaaaagagcagccaaca 205  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||| | |||||| |||||| |||||||||||||||||||||||| ||||||||||  |    
6712670 tttttcagacgtaaaagcccatgggttgcttgctatgtaatgtttatgccttttcttagggtttaagttagcttttaggctataaatagagcagccacta 6712571  T
206 -aacttattattcatcttttattattgggaattttccgcgacaattattt 254  Q
     | ||||| ||||||||||| || ||||||||| |  | |||||||||||    
6712570 gaccttatgattcatcttttgttcttgggaattctatgtgacaattattt 6712521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 161 - 297
Target Start/End: Complemental strand, 679632 - 679492
Alignment:
161 ttagggcttaagttagcttttaggctataaaaagagcagccaacaaacttattat-tcatcttttattattgggaattttccgcgacaattatttctttg 259  Q
    |||||||||||||||| ||||||||||||||| ||||||| | || |||| | || ||||||||| || |||  |||| |  | ||||||||||||||||    
679632 ttagggcttaagttag-ttttaggctataaaaggagcagctagcagacttgtaatctcatcttttgttcttgaaaattctaagtgacaattatttctttg 679534  T
260 aataaaagttc----ttattttcttgttatttatttttatgt 297  Q
    |||||||||||    |||||||||||||||||| ||||||||    
679533 aataaaagttcttctttattttcttgttatttacttttatgt 679492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 282
Target Start/End: Original strand, 10018882 - 10019051
Alignment:
114 gacccaaaagtccatgggttgcttgctatgtaatgtttgtacctttt-ttagggcttaagttagcttttaggctataaaaagagcagccaacaaactt-a 211  Q
    |||| ||||| |||||||||||||||| ||| ||  || | |||||| ||| |||||||||||||||| ||||||||||  |||||||||  | || | |    
10018882 gacctaaaagcccatgggttgcttgctttgttattattattccttttcttatggcttaagttagcttt-aggctataaatcgagcagccattagacatga 10018980  T
212 ttattcatcttttattattgggaattttccgcgacaattatttctttgaataaaagttcttattttcttgt 282  Q
    || |||||||||| || ||||||||| |  | ||||||||||||  | ||| |||||||||||||||||||    
10018981 ttcttcatcttttgttcttgggaattctttgtgacaattatttccattaatcaaagttcttattttcttgt 10019051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 430
Target Start/End: Complemental strand, 6711980 - 6711861
Alignment:
306 gaaccaataatcccgaggcgctttttattattaatttt-atcaatcaaaaatccaaactttttaacctttaaactttcagctaatcacctttaaaaagag 404  Q
    ||||||||||||||||| |||||||||||||||||||| || |||| |||||| |||||||| || |||||| |||||     |||||| ||||| ||||    
6711980 gaaccaataatcccgagacgctttttattattaattttcattaatc-aaaatcaaaacttttcaaactttaatctttc-----atcaccattaaatagag 6711887  T
405 aatcacaattacaacaactctctgct 430  Q
    ||||| ||||||| || ||| |||||    
6711886 aatcaaaattacatcacctccctgct 6711861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 295
Target Start/End: Original strand, 38877362 - 38877496
Alignment:
164 gggcttaagttagcttttaggctataaaaagagcagccaacaaacttat-tattcatcttttattattgggaattttccgcgacaattatttctttgaat 262  Q
    ||||||||||||| |||||||||||||| |||||||  | ||||| ||| | |||||||||| || |||| |||| |  | ||||||| |||||||||||    
38877362 gggcttaagttag-ttttaggctataaatagagcagatagcaaacatatattttcatcttttgttcttggaaattataagtgacaattgtttctttgaat 38877460  T
263 aaaagttc---ttattttcttgttatttatttttat 295  Q
    ||||||||   ||| |||||||||||||| ||||||    
38877461 aaaagttctctttactttcttgttatttacttttat 38877496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 344
Target Start/End: Original strand, 4541779 - 4541817
Alignment:
306 gaaccaataatcccgaggcgctttttattattaatttta 344  Q
    |||||||||||||| |||||||||||||||||| |||||    
4541779 gaaccaataatcccaaggcgctttttattattattttta 4541817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 2325316 - 2325284
Alignment:
306 gaaccaataatcccgaggcgctttttattatta 338  Q
    ||||||||||||||||||| |||||||||||||    
2325316 gaaccaataatcccgaggctctttttattatta 2325284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 4983200 - 4983143
Alignment:
244 gacaattatttctttgaataaaagttc----ttattttcttgttatttatttttatgt 297  Q
    ||||||| |||||||||||||||||||    ||||||||||||||||||  |||||||    
4983200 gacaattgtttctttgaataaaagttcatctttattttcttgttatttacctttatgt 4983143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 16076877 - 16076820
Alignment:
244 gacaattatttctttgaataaaagttc----ttattttcttgttatttatttttatgt 297  Q
    ||||||| |||||||||||||||||||    ||| |||||||||||||| ||||||||    
16076877 gacaattgtttctttgaataaaagttcacctttactttcttgttatttacttttatgt 16076820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 91 - 282
Target Start/End: Complemental strand, 22578561 - 22578368
Alignment:
91 ctgctatgttttgttatttttcagacccaaaagtccatgggttgctt-gctatgtaatgtttgtacctttt-ttagggcttaagttagcttttaggctat 188  Q
    ||||||||||||||||||||| |||||  |||| ||||||||||||| |||||||||||||| | |||||| ||||||||||||||||||||||||||||    
22578561 ctgctatgttttgttattttttagacctgaaagaccatgggttgctttgctatgtaatgtttatgccttttcttagggcttaagttagcttttaggctat 22578462  T
189 aaaaagagcagccaacaaacttattattcatcttttattattgggaattttccgcgacaattatttctttgaataaaagttcttattttcttgt 282  Q
    ||| |||||||||| || |||||||||||||||||| || |||| ||||||  | ||||| |||||||||||||||||||||||||||||||||    
22578461 aaatagagcagccaccagacttattattcatcttttgtttttggaaattttatgtgacaactatttctttgaataaaagttcttattttcttgt 22578368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 99 - 273
Target Start/End: Original strand, 15027335 - 15027511
Alignment:
99 ttttgttat-ttttcagacccaaaagtccatgggttgcttgctatgtaatgtttgtacctttt-ttagggcttaagttagcttttaggctataaaaagag 196  Q
    ||||||||| |||| ||||| ||||| ||||||||||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||| ||||    
15027335 ttttgttatatttttagacctaaaagcccatgggttgcttgctatgtaatttttatgcctttttttagggcttaagttagcttttaggctataaatagag 15027434  T
197 cagccaaca-aacttattattcatcttttattattgggaattttccgcgacaattatttctttgaataaaagttctta 273  Q
    |||||| || | ||||| ||||||||||| || |||||||||||  | ||||| |||||| || ||||||||||||||    
15027435 cagccaccataccttatgattcatcttttgttcttgggaattttatgtgacaactatttcatt-aataaaagttctta 15027511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 306 - 424
Target Start/End: Complemental strand, 22577862 - 22577745
Alignment:
306 gaaccaataatcccgaggcgctttttattattaattttatcaatcaaaaatccaaactttttaacctttaaactttcagctaatcacctttaaaaagaga 405  Q
    |||||||| ||||||| |||||||||| ||||| |||| | ||   ||||||||||||||| ||| | ||| ||||||| |||||||| |||||||||||    
22577862 gaaccaatgatcccgatgcgctttttactattatttttcttaaatcaaaatccaaacttttcaac-tgtaatctttcagttaatcaccattaaaaagaga 22577764  T
406 atcacaattacaacaactc 424  Q
    |||| ||||||||||||||    
22577763 atcaaaattacaacaactc 22577745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 24023932 - 24023858
Alignment:
214 attcatcttttattattgggaattttccgcgacaattatttctttgaataaaagttcttattttcttgttattta 288  Q
    ||||||||||| || |||| ||||||  | ||||| |||||||||||||||||||||||||||||||||| ||||    
24023932 attcatcttttgttcttggaaattttatgtgacaactatttctttgaataaaagttcttattttcttgttcttta 24023858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 398
Target Start/End: Complemental strand, 24018135 - 24018043
Alignment:
306 gaaccaataatcccgaggcgctttttattattaatttt-atcaatcaaaaatccaaactttttaacctttaaactttcagctaatcacctttaa 398  Q
    |||||||||||||||||||| ||||||||||  ||||| || |||||||| || |||||||| || |||||| |||||||||||||||| ||||    
24018135 gaaccaataatcccgaggcgttttttattatatattttcataaatcaaaa-tcaaaacttttcaaactttaatctttcagctaatcaccattaa 24018043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 280
Target Start/End: Complemental strand, 24018724 - 24018626
Alignment:
184 gctataaaaagagcagccaacaaactt--attattcatcttttattattgggaattttccgcgacaattatttctttgaataaaagttcttattttctt 280  Q
    |||||||| |||| || || |||||||  || |||||| |||| || |||||||||||  | ||||| |||||||||||||||||||||||||||||||    
24018724 gctataaatagaggagtcaccaaacttgcataattcatgttttgttcttgggaattttatgtgacaactatttctttgaataaaagttcttattttctt 24018626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 297
Target Start/End: Complemental strand, 24371568 - 24371432
Alignment:
164 gggcttaagttagcttttaggctataaaaagagcagccaacaaacttat-tattcatcttttattattgggaattttccgcgacaattatttctttgaat 262  Q
    ||||||||||||| |||||| ||||||| |||||| | | ||||| ||| | |||||||||| || |||| | || |  | ||||||| |||||||||||    
24371568 gggcttaagttag-ttttagactataaatagagcatctagcaaacatatattttcatcttttgttcttggaatttataagtgacaattgtttctttgaat 24371470  T
263 aaaagttct---tattttcttgttatttatttttatgt 297  Q
    |||| ||||   ||||||||||||| ||| ||||||||    
24371469 aaaatttctctctattttcttgttaattacttttatgt 24371432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 24825033 - 24824976
Alignment:
244 gacaattatttctttgaataaaagttc----ttattttcttgttatttatttttatgt 297  Q
    ||||||| |||||||||||||||||||    ||| |||||||||||||| ||||||||    
24825033 gacaattgtttctttgaataaaagttcacctttactttcttgttatttacttttatgt 24824976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 29952180 - 29952225
Alignment:
306 gaaccaataatcccgaggcgctttttattattaattttatcaatcaaa 353  Q
    ||||||||||||||||| ||||||||||||||  || |||||||||||    
29952180 gaaccaataatcccgagacgctttttattatt--ttatatcaatcaaa 29952225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 31590051 - 31590019
Alignment:
306 gaaccaataatcccgaggcgctttttattatta 338  Q
    |||||||||||| ||||||||||||||||||||    
31590051 gaaccaataatctcgaggcgctttttattatta 31590019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 68 - 283
Target Start/End: Complemental strand, 32796778 - 32796562
Alignment:
68 gcacgaccgtgccaagtcccagactgctatgttttgttatttttcagacccaaaagtccatgggttgcttg-ctatgtaatgtttgtacctttt-ttagg 165  Q
    ||||||||||||| ||| |||| ||||||||||||||||||||| ||||| ||||| ||||| |||||||  ||||||||||||| | |||||| |||||    
32796778 gcacgaccgtgcctagttccag-ctgctatgttttgttattttttagacctaaaagcccatgagttgcttttctatgtaatgtttatgccttttcttagg 32796680  T
166 gcttaagttagcttttaggctataaaaagagcagccaacaaacttattattcatcttttattattgggaattttccgcgacaattattt-ctttgaataa 264  Q
    |||||||||||||||||||||||||| |||||| ||| || ||||||||| |||| ||| || ||||||||| || | ||||||||||| | |||||| |    
32796679 gcttaagttagcttttaggctataaatagagcaaccaccatacttattatgcatc-tttgttcttgggaattctctgtgacaattatttccattgaatca 32796581  T
265 aagttcttattttcttgtt 283  Q
    |||||||||||||||||||    
32796580 aagttcttattttcttgtt 32796562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 68 - 292
Target Start/End: Original strand, 13168185 - 13168414
Alignment:
68 gcacgaccgtgccaagtcccagactgctatgttttgttatttttcagacccaaaagtccatgggttgcttgctatgtaat---gtttgtacctttt-tta 163  Q
    ||||||||||||||||| |||  |||||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||   |||| | |||||| |||    
13168185 gcacgaccgtgccaagttccaagctgctatgttttgtaatttt-cagacctaaaagcccatgggttgcttgctatgtaataatgtttatgccttttctta 13168283  T
164 gggcttaagttagcttttaggctataaaaagagcagccaacaaac--ttattattcatcttttattattgggaattttccgcgacaattattt-ctttga 260  Q
    || ||||||||||||||||||||||||| |||||||||| || ||  |||| ||||||||||| || ||||||||| ||   || |||||||| | ||||    
13168284 ggtcttaagttagcttttaggctataaatagagcagccaccagacctttatgattcatcttttgttcttgggaattctctatgataattatttccattga 13168383  T
261 ataaaagttcttattttcttgttatttatttt 292  Q
    || |||||||| ||||||||||| ||||||||    
13168384 atcaaagttctgattttcttgtt-tttatttt 13168414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 306 - 424
Target Start/End: Complemental strand, 32796042 - 32795923
Alignment:
306 gaaccaataatcccgaggcgctttttattattaatttt--atcaatcaaaaatccaaactttttaacctttaaactttcagctaatcacctttaaaaaga 403  Q
    ||||||||||||||||| ||||||||||||||||||||  ||| |||| || ||||||||||| || |||||| |||||||||||||||| |||||||||    
32796042 gaaccaataatcccgagacgctttttattattaattttgtatcgatcataa-tccaaacttttcaaactttaatctttcagctaatcaccattaaaaaga 32795944  T
404 gaatcacaattacaacaactc 424  Q
    |||||| ||||||||||||||    
32795943 gaatcataattacaacaactc 32795923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 306 - 425
Target Start/End: Original strand, 13168921 - 13169041
Alignment:
306 gaaccaataatcccgaggcgctttttattattaatttt-atcaatcaaaaatccaaactttttaacctttaaactttcagctaatcacctttaaaaagag 404  Q
    ||||||||||||| || || |||||||| ||||||||  |||||||||||||| || ||||| ||||||||||||||||| ||||||   ||||||||||    
13168921 gaaccaataatcctgatgcactttttatcattaatttacatcaatcaaaaatcaaaccttttaaacctttaaactttcagttaatcatggttaaaaagag 13169020  T
405 aatcacaattacaacaactct 425  Q
    ||||| |||||||||||||||    
13169021 aatcaaaattacaacaactct 13169041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 17522454 - 17522388
Alignment:
222 tttattattgggaattttccgcgacaattatttctttgaataaaagttcttattttcttgttattta 288  Q
    |||||| |||||||||||| | ||||| ||||||||||||| |||||||||||||||||||| ||||    
17522454 tttattcttgggaattttcagtgacaactatttctttgaatcaaagttcttattttcttgttcttta 17522388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 289
Target Start/End: Original strand, 9414324 - 9414432
Alignment:
184 gctataaaaagagcagccaacaaactt--attattcatcttttattattgggaattttccgcgacaattatttctttgaataaaagttcttatttt-ctt 280  Q
    |||||||| |||| | ||| |||||||  || ||||||||||| || ||||||||| |  | |||||||||||||||||||||||||||||||||| |||    
9414324 gctataaatagaggaaccatcaaacttgtataattcatcttttgttcttgggaattcttagtgacaattatttctttgaataaaagttcttattttactt 9414423  T
281 gttatttat 289  Q
    ||| |||||    
9414424 gttctttat 9414432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 29682551 - 29682688
Alignment:
164 gggcttaagttagcttttaggctataaaaagagcagccaacaaacttat-tattcatcttttattattgggaattttccgcgacaattatttctttgaat 262  Q
    ||||||||||||| |||||| ||||||| |||| ||| | || || ||| | ||||||||||||| |||| |||| |  | |||||||||||||||| ||    
29682551 gggcttaagttagtttttag-ctataaatagagaagctagcagacatatattttcatcttttattcttggaaattctaagtgacaattatttctttggat 29682649  T
263 aaaagttc----ttattttcttgttatttatttttatgt 297  Q
    ||||||||    ||||||||||| |||||| ||||||||    
29682650 aaaagttcttctttattttcttgctatttacttttatgt 29682688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 20222863 - 20223000
Alignment:
164 gggcttaagttagcttttaggctataaaaagagcagccaacaaacttattat-tcatcttttattattgggaattttccgcgacaattatttctttgaat 262  Q
    ||||||||||||| |||||||||||||| |||||| | |  |||| |||  | ||||||||| || |||| |||  |  | ||||||| |||||||||||    
20222863 gggcttaagttag-ttttaggctataaatagagcaactagaaaacatatattctcatcttttgttcttggaaataataagtgacaattgtttctttgaat 20222961  T
263 aaaagttc----ttattttcttgttatttatttttatgt 297  Q
    ||||||||    |||||||||||||||||| ||||||||    
20222962 aaaagttcatctttattttcttgttatttacttttatgt 20223000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 21238017 - 21237972
Alignment:
244 gacaattatttctttgaataaaagttcttattttcttgttatttat 289  Q
    ||||||| ||||||||||| |||||||||||||||||||| |||||    
21238017 gacaattgtttctttgaatcaaagttcttattttcttgttctttat 21237972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 22116847 - 22116984
Alignment:
164 gggcttaagttagcttttaggctataaaaagagcagccaacaaacttattat-tcatcttttattattgggaattttccgcgacaattatttctttgaat 262  Q
    ||||||||||||| |||||||||||||| |||||| | |  |||| |||  | ||||||||| || |||| |||  |  | ||||||| |||||||||||    
22116847 gggcttaagttag-ttttaggctataaatagagcaactagaaaacatatattctcatcttttgttcttggaaataataagtgacaattgtttctttgaat 22116945  T
263 aaaagttc----ttattttcttgttatttatttttatgt 297  Q
    ||||||||    |||||||||||||||||| ||||||||    
22116946 aaaagttcatctttattttcttgttatttacttttatgt 22116984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 267
Target Start/End: Complemental strand, 31965678 - 31965575
Alignment:
164 gggcttaagttagcttttaggctataaaaagagcagccaacaaacttattat-tcatcttttattattgggaattttccgcgacaattatttctttgaat 262  Q
    ||||||||||||| |||||||||||||| |||||||| | ||||| |||  | ||||||||| || |||| |||| |  | ||||||| |||||||||||    
31965678 gggcttaagttag-ttttaggctataaatagagcagctagcaaacatatattgtcatcttttgttcttggaaattataagtgacaattgtttctttgaat 31965580  T
263 aaaag 267  Q
    |||||    
31965579 aaaag 31965575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 344
Target Start/End: Original strand, 26822468 - 26822506
Alignment:
306 gaaccaataatcccgaggcgctttttattattaatttta 344  Q
    |||||||||||||| |||||||||||||||||| |||||    
26822468 gaaccaataatcccaaggcgctttttattattactttta 26822506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 210189 - 210132
Alignment:
244 gacaattatttctttgaataaaagttc----ttattttcttgttatttatttttatgt 297  Q
    ||||||| |||||||||||||||||||    ||| |||||||||||||| ||||||||    
210189 gacaattgtttctttgaataaaagttcacctttactttcttgttatttacttttatgt 210132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 18448812 - 18448869
Alignment:
244 gacaattatttctttgaataaaagttc----ttattttcttgttatttatttttatgt 297  Q
    ||||||| |||||||||||||||||||    ||| |||||||||||||| ||||||||    
18448812 gacaattgtttctttgaataaaagttcacctttactttcttgttatttacttttatgt 18448869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 24218757 - 24218814
Alignment:
244 gacaattatttctttgaataaaagttc----ttattttcttgttatttatttttatgt 297  Q
    ||||||| |||||||||||||||||||    ||| |||||||||||||| ||||||||    
24218757 gacaattgtttctttgaataaaagttcacctttactttcttgttatttacttttatgt 24218814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 68 - 282
Target Start/End: Original strand, 24679974 - 24680189
Alignment:
68 gcacgaccgtgccaagtcccagactgctatgttttgttatttttcagacccaaaagtccatgggttgctt-gctatgtaatgtttgtacctttt-ttagg 165  Q
    ||||||||||||||||   ||| ||||||||||||||||||||| ||||| ||||||  ||| ||||||| |||||||||||||| | |||||| |||||    
24679974 gcacgaccgtgccaagcttcag-ctgctatgttttgttattttttagacctaaaagtgaatgagttgctttgctatgtaatgtttatgccttttcttagg 24680072  T
166 gcttaagttagcttttaggctataaaaagagcagccaacaaacttattattcatcttttattattgggaattttccgcgacaattatttctttgaataaa 265  Q
    ||| |||||||||||||||||||||| || ||||||| || |||||| | ||||||||| || ||||| |||||  | ||||| |||||||||||| |||    
24680073 gctcaagttagcttttaggctataaatagggcagccaccagacttatgaatcatcttttgttcttggggattttatgtgacaactatttctttgaacaaa 24680172  T
266 agttcttattttcttgt 282  Q
    |||||||||||||||||    
24680173 agttcttattttcttgt 24680189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 424
Target Start/End: Original strand, 24680751 - 24680796
Alignment:
379 tttcagctaatcacctttaaaaagagaatcacaattacaacaactc 424  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||    
24680751 tttcagctaatcaccattaaaaagagaatcataattacaacaactc 24680796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 21918802 - 21918868
Alignment:
108 ttttcagacccaaaagtccatgggttgcttgctatgtaatgtttgtacctttt-ttagggcttaagt 173  Q
    |||||||||| ||||| ||||||||||||||||||||||| ||| | | |||| |||||||||||||    
21918802 ttttcagacctaaaagcccatgggttgcttgctatgtaatttttattcattttcttagggcttaagt 21918868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 390
Target Start/End: Complemental strand, 1869952 - 1869886
Alignment:
324 cgctttttattattaatttta-tcaatcaaaaatccaaactttttaacctttaaactttcagctaatc 390  Q
    ||||||||||||||| ||| | ||||  |||||||| ||||||| |||||||||||||||||||||||    
1869952 cgctttttattattattttcaatcaaataaaaatcccaactttt-aacctttaaactttcagctaatc 1869886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 292
Target Start/End: Original strand, 2129902 - 2129985
Alignment:
212 ttattcatcttttattattgggaattttccgcgacaattatttct-ttgaataaaagttctt--attttcttgttatttatttt 292  Q
    |||||||||||| | | ||||||||| |  | ||||||||||||| |||||| |||||||||  ||||||||||| ||||||||    
2129902 ttattcatctttgaatcttgggaattctttgtgacaattatttctattgaatcaaagttcttttattttcttgttctttatttt 2129985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 21784272 - 21784215
Alignment:
244 gacaattatttctttgaataaaagttc----ttattttcttgttatttatttttatgt 297  Q
    ||||||| |||||||||||||||||||    ||| |||||||||||||| ||||||||    
21784272 gacaattgtttctttgaataaaagttcacctttactttcttgttatttacttttatgt 21784215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 107 - 218
Target Start/End: Complemental strand, 31317 - 31206
Alignment:
107 tttttcagacccaaaagtccatgggttgcttgctatgtaatgtttgtacctttt-ttagggcttaagttagcttttaggctataaaaagagcagccaaca 205  Q
    ||||||||||| ||||  ||||||||||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||| |||||||||| ||    
31317 tttttcagacctaaaatcccatgggttgcttgctatgtaattttt-tgccttttcttagggcttaagttagcttttaggctataaatagagcagccacca 31219  T
206 aacttattattca 218  Q
     || |||||||||    
31218 gacatattattca 31206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 99 - 256
Target Start/End: Complemental strand, 32097 - 31940
Alignment:
99 ttttgtta-tttttcagacccaaaagtccatgggttgcttgctatgtaatgtttgtacctttt-ttagggcttaagttagcttttaggctataaaaagag 196  Q
    |||||||| ||||||||||| ||||| ||| ||||||||||||||||||| ||| | |||||| ||| ||||||||||||||| ||||||||||| ||||    
32097 ttttgttactttttcagacctaaaagcccacgggttgcttgctatgtaat-tttatgccttttcttaaggcttaagttagcttataggctataaatagag 31999  T
197 cagccaacaaacttattattcatcttttattattgggaattttccgcgacaattatttct 256  Q
    |||||| || || ||||||||||| ||| || || ||||||||| | ||||| |||||||    
31998 cagccaccagacatattattcatc-tttgttcttaggaattttcagtgacaactatttct 31940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 33465 - 33374
Alignment:
107 tttttcagacccaaaagtccatgggttgcttgctatgtaatgtttgtacctttt-ttagggcttaagttagcttttaggctataaaaagagca 198  Q
    ||||||| ||| ||||  || |||||||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||||||| ||||||    
33465 tttttcaaacctaaaatcccttgggttgcttgctatgtaat-tttatgccttttcttagggcttaagttagcttttaggctataaatagagca 33374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 68 - 290
Target Start/End: Original strand, 12347219 - 12347444
Alignment:
68 gcacgaccgtgccaag-tcccagactgctatgttttgttat-ttttcagacccaaaagtccatgggttgcttgctatgtaatgtttgtacctttt-ttag 164  Q
    |||||||||||||||| | |||| || ||||  |||||||| |||||| | | ||||| |||||||||| |||||||||||| ||| | |||||| ||||    
12347219 gcacgaccgtgccaaggttccaggcttctat--tttgttatgttttcataactaaaagcccatgggttgtttgctatgtaatttttatgccttttcttag 12347316  T
165 ggcttaagttagcttttaggctataaaaagagcagccaaca-aacttattattcatcttttattattgggaattttccgcgacaattatttctttgaata 263  Q
    |||||||||||||||||||| |||||| |||||||||| || | |||  |||||||||| | || ||| |||||||  | ||||| ||||||  | ||||    
12347317 ggcttaagttagcttttaggatataaatagagcagccaccagacctttatattcatcttgtgttcttgtgaattttatgtgacaactatttccattaata 12347416  T
264 aaagttctta-ttttcttgttatttatt 290  Q
    |||||||||| |||||||| | ||||||    
12347417 aaagttcttacttttcttgctttttatt 12347444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 99 - 290
Target Start/End: Complemental strand, 13883678 - 13883484
Alignment:
99 ttttgttat-ttttcagacccaaaagtccatgggttgcttgctatgtaatgtttgtacctttttta-gggcttaagttagcttttaggctataaaaagag 196  Q
    ||||||||| |||||  ||| ||||| |||||||||||||||||| |||| ||| | |||||| || ||||||||||||||||||||||||||||  |||    
13883678 ttttgttatgttttcctacctaaaagcccatgggttgcttgctatataat-tttatgccttttctaagggcttaagttagcttttaggctataaatcgag 13883580  T
197 cagccaaca-aacttattattcatcttttattattgggaattttccgcgacaattatttctttgaataaaagttctta-ttttcttgttatttatt 290  Q
     ||||| || | ||| | |||||| |||| || |||||||||||  | ||||| ||||||  | |||||||||||||| |||||||| | ||||||    
13883579 tagccaccagaccttgtgattcatattttgttcttgggaattttatgtgacaactatttccattaataaaagttcttacttttcttgctttttatt 13883484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 424
Target Start/End: Complemental strand, 13883005 - 13882886
Alignment:
306 gaaccaataatcccgaggcgctttttattattaatttta-tcaatcaaaaatccaaactttttaacctttaaactttcagctaatcacctttaaaaagag 404  Q
    ||||||| |||||| |||| ||||||||||||| ||| | |||||||||||||| ||||||| || |  ||| ||||||||||| ||||  |||||||      
13883005 gaaccaacaatcccaaggcactttttattattattttcaatcaatcaaaaatcccaacttttaaaaccctaatctttcagctaaacaccactaaaaagca 13882906  T
405 aatcacaattacaacaactc 424  Q
    ||||| ||| ||||||||||    
13882905 aatcaaaatcacaacaactc 13882886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 12506704 - 12506640
Alignment:
72 gaccgtgccaagtcccagactgctatgttttgttatttttcagacccaaaagtccatgggttgctt 137  Q
    ||||||||||||| ||| |||||||||||| ||||||||||||||  ||||| |||||||||||||    
12506704 gaccgtgccaagttcca-actgctatgtttggttatttttcagacgtaaaagcccatgggttgctt 12506640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 17168881 - 17168938
Alignment:
244 gacaattatttctttgaataaaagttct----tattttcttgttatttatttttatgt 297  Q
    ||||||||||||||||||||||||||||    ||||||||||||||||| ||||||||    
17168881 gacaattatttctttgaataaaagttcttctctattttcttgttatttacttttatgt 17168938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 17174453 - 17174510
Alignment:
244 gacaattatttctttgaataaaagttct----tattttcttgttatttatttttatgt 297  Q
    ||||||||||||||||||||||||||||    ||||||||||||||||| ||||||||    
17174453 gacaattatttctttgaataaaagttcttctctattttcttgttatttacttttatgt 17174510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 21102280 - 21102223
Alignment:
244 gacaattatttctttgaataaaagttc----ttattttcttgttatttatttttatgt 297  Q
    |||||||||||||||||||||||||||    ||| |||||||||||||| ||||||||    
21102280 gacaattatttctttgaataaaagttcacctttactttcttgttatttacttttatgt 21102223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 270
Target Start/End: Complemental strand, 23793725 - 23793620
Alignment:
164 gggcttaagttagcttttaggctataaaaagagcagccaacaaacttat-tattcatcttttattattgggaattttccgcgacaattatttctttgaat 262  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||| ||| |  ||||||||| || |||| |||| |  | | ||||| |||||||||||    
23793725 gggcttaagttag-ttttaggctataaatagagcagctaacaaacatatattctcatcttttgttcttggaaattataagtg-caattgtttctttgaat 23793628  T
263 aaaagttc 270  Q
    ||||||||    
23793627 aaaagttc 23793620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 11048934 - 11048975
Alignment:
351 aaaaatccaaactttttaaccttt-aaactttcagctaatca 391  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
11048934 aaaaatccaaactttttaacctttgaaactttcatctaatca 11048975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 289
Target Start/End: Original strand, 55267549 - 55267629
Alignment:
212 ttattcatcttttattattgggaattttccgcgacaattatttc-tttgaataaaagttc--ttattttcttgttatttat 289  Q
    |||||||||||| | | ||||||||| ||  ||||||||||||| ||||||| |||||||  ||||||||||||| |||||    
55267549 ttattcatctttgaatcttgggaattctctacgacaattatttcttttgaatcaaagttcttttattttcttgttctttat 55267629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 6518407 - 6518464
Alignment:
244 gacaattatttctttgaataaaagttc----ttattttcttgttatttatttttatgt 297  Q
    ||||||| |||||||||||||||||||    ||| |||||||||||||| ||||||||    
6518407 gacaattgtttctttgaataaaagttcacctttactttcttgttatttacttttatgt 6518464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 108 - 277
Target Start/End: Complemental strand, 27992907 - 27992738
Alignment:
108 ttttcagacccaaaagtccatgggttgcttgctatgtaatgtttgtacctttt-ttagggcttaagttagcttttaggctataaaaagagcagccaacaa 206  Q
    |||||| ||| ||||| |||||||||||||||| ||||||  || | | |||| |||||||||||| ||||||| |||||||||| |||| ||||| ||     
27992907 ttttcaaacctaaaag-ccatgggttgcttgctttgtaattcttattcattttcttagggcttaagctagcttt-aggctataaatagagtagccaccag 27992810  T
207 acttat-tattcatcttttattattgggaattttccgcgacaattatttctttgaataaaagttcttatttt 277  Q
    || ||| | |||||||||| || |||||||||||  | ||||||||||||  | ||||||||||||||||||    
27992809 acatatctcttcatcttttgttcttgggaattttatgtgacaattatttccatcaataaaagttcttatttt 27992738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 14826646 - 14826713
Alignment:
216 tcatcttttattattgggaattttccgcgacaattatttctttgaataaaagttcttattttcttgtt 283  Q
    |||| ||||||| |||||||||||| | ||||| ||||||||||||||| ||||||||||||||||||    
14826646 tcatattttattcttgggaattttcagtgacaactatttctttgaataagagttcttattttcttgtt 14826713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 17023274 - 17023326
Alignment:
244 gacaattatttctttgaataaaagttc----ttattttcttgttatttatttt 292  Q
    ||||||| |||||||||||||||||||    ||||||||||||||||||||||    
17023274 gacaattgtttctttgaataaaagttcatctttattttcttgttatttatttt 17023326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0855 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0855
Description:

Target: scaffold0855; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 297
Target Start/End: Original strand, 3423 - 3562
Alignment:
161 ttagggcttaagttagcttttaggctataaaaagagcagccaacaaacttat-tattcatcttttattattgggaattttccgcgacaattatttctttg 259  Q
    |||||||||||||||| |||||||||||||| |||||||| | ||||| ||| | |||||||||| || |||| |||| |  | ||||||| |||||| |    
3423 ttagggcttaagttag-ttttaggctataaatagagcagctagcaaacatatattttcatcttttgttcttggaaattataagtgacaattgtttcttag 3521  T
260 aataaaagttc---ttattttcttgttatttatttttatgt 297  Q
    |||||||||||   ||||||| |||||||||| ||||||||    
3522 aataaaagttctctttattttattgttatttacttttatgt 3562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0855; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 373
Target Start/End: Original strand, 4079 - 4149
Alignment:
306 gaaccaataatcccgaggcgctttttattattaattttatcaatc---aaaaatccaaactttttaacctt 373  Q
    |||||||||||||| | |||||||||||||||| | || ||||||   |||||||| ||||||| ||||||    
4079 gaaccaataatcccaatgcgctttttattattattattttcaatcgataaaaatcccaacttttcaacctt 4149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0847 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0847
Description:

Target: scaffold0847; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 297
Target Start/End: Original strand, 3588 - 3727
Alignment:
161 ttagggcttaagttagcttttaggctataaaaagagcagccaacaaacttat-tattcatcttttattattgggaattttccgcgacaattatttctttg 259  Q
    |||||||||||||||| |||||||||||||| |||||||| | ||||| ||| | |||||||||| || |||| |||| |  | ||||||| |||||| |    
3588 ttagggcttaagttag-ttttaggctataaatagagcagctagcaaacatatattttcatcttttgttcttggaaattataagtgacaattgtttcttag 3686  T
260 aataaaagttc---ttattttcttgttatttatttttatgt 297  Q
    |||||||||||   ||||||| |||||||||| ||||||||    
3687 aataaaagttctctttattttattgttatttacttttatgt 3727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0847; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 373
Target Start/End: Original strand, 4244 - 4314
Alignment:
306 gaaccaataatcccgaggcgctttttattattaattttatcaatc---aaaaatccaaactttttaacctt 373  Q
    |||||||||||||| | |||||||||||||||| | || ||||||   |||||||| ||||||| ||||||    
4244 gaaccaataatcccaatgcgctttttattattattattttcaatcgataaaaatcccaacttttcaacctt 4314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 7465580 - 7465511
Alignment:
133 tgcttgctatgtaatgtttgtacctttt-ttagggcttaagttagcttttaggctataaaaagagcagcca 202  Q
    |||||||||||||| |||| | |||||| ||||||||||||||||||||||||||||||| ||||||||||    
7465580 tgcttgctatgtaa-gtttttgccttttcttagggcttaagttagcttttaggctataaatagagcagcca 7465511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 86 - 191
Target Start/End: Complemental strand, 31469887 - 31469781
Alignment:
86 ccagactgctatgttttgttat-ttttcagacccaaaagtccatgggttgcttgctatgtaatgtttgta---ccttttttagggcttaagttagctttt 181  Q
    ||||||||||||  |||||||| |||||||||| ||||| || |||||||||| ||||||||| ||||||   | ||| |||||| ||||||||||||||    
31469887 ccagactgctat--tttgttatgttttcagacctaaaagcccttgggttgcttactatgtaat-tttgtatgtcttttcttagggattaagttagctttt 31469791  T
182 aggctataaa 191  Q
    ||||||||||    
31469790 aggctataaa 31469781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 297
Target Start/End: Complemental strand, 24221683 - 24221543
Alignment:
161 ttagggcttaagttagcttttaggctataaaaagagcagccaacaaacttatt-attcatcttttattattgggaattttccgcgacaattatttctttg 259  Q
    |||||||||||||||| |||||| ||||||| |||||| | | ||||| |||  | |||| |||| || |||| |||| |  | ||||||||||||||||    
24221683 ttagggcttaagttag-ttttagactataaatagagcaactagcaaacatatacaatcattttttgttcttggaaattctaagtgacaattatttctttg 24221585  T
260 aataaaagttc----ttattttcttgttatttatttttatgt 297  Q
    |||||||||||    |||||||||||||||||| ||| ||||    
24221584 aataaaagttcatatttattttcttgttatttactttcatgt 24221543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 15634309 - 15634355
Alignment:
244 gacaattatttctttgaataaaagttctta-ttttcttgttatttat 289  Q
    ||||||||||||||||||| |||||||||| |||||||||| |||||    
15634309 gacaattatttctttgaatcaaagttcttatttttcttgttctttat 15634355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 15636082 - 15636128
Alignment:
244 gacaattatttctttgaataaaagttctta-ttttcttgttatttat 289  Q
    ||||||||||||||||||| |||||||||| |||||||||| |||||    
15636082 gacaattatttctttgaatcaaagttcttatttttcttgttctttat 15636128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 13773 - 13837
Alignment:
72 gaccgtgccaagtcccagactgctatgttttgttatttttcagacccaaaagtccatgggttgctt 137  Q
    ||||||||||||| ||| |||||||||||| ||||||||||||||  ||||| |||||||||||||    
13773 gaccgtgccaagttcca-actgctatgtttggttatttttcagacgtaaaagcccatgggttgctt 13837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 286
Target Start/End: Original strand, 38481 - 38578
Alignment:
193 agagcagccaacaaacttat-tattcatcttttattattgggaattttccgcgacaattatttctttgaataaaagttc---ttattttcttgttatt 286  Q
    |||||||||| || |||||| |||||||||||| || |||| |||| |  | ||||||| |||||||||||||||||||   ||||||||||||||||    
38481 agagcagccatcagacttatctattcatcttttgttcttggaaattataagtgacaattgtttctttgaataaaagttctctttattttcttgttatt 38578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 297
Target Start/End: Complemental strand, 23029708 - 23029571
Alignment:
164 gggcttaagttagcttttaggctataaaaagagcagccaacaaacttat-tattcatcttttattattgggaattttccgcgacaattatttctttgaat 262  Q
    ||||||| ||||| |||||||||||||| |||||||| | || || ||| |||||||||||| || |||| |||| |  | ||  ||| |||||||||||    
23029708 gggcttatgttag-ttttaggctataaatagagcagctagcagacatatctattcatcttttgttcttggaaattataagtgaagattgtttctttgaat 23029610  T
263 aaaagttc----ttattttcttgttatttatttttatgt 297  Q
    ||||||||    |||||||||||||||||| || |||||    
23029609 aaaagttcttctttattttcttgttatttacttctatgt 23029571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 288
Target Start/End: Original strand, 1630 - 1698
Alignment:
221 ttttattattgggaattttccgcgacaattatttct-ttgaataaaagttcttattttcttgttattta 288  Q
    ||||||||||||||||| ||   ||||||||||||  |||||||||| ||||||||||||| |||||||    
1630 ttttattattgggaattctctatgacaattatttccattgaataaaatttcttattttcttcttattta 1698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 168155 - 168289
Alignment:
164 gggcttaagttagcttttaggctataaaaagagcagccaacaaacttat-tattcatcttttattattgggaattttccgcgacaattatttctttgaat 262  Q
    ||||||||||||| ||||||||||||||| ||||||| | || || ||| || ||||||||| || |||| |||| |  | ||||||||||||||| |||    
168155 gggcttaagttag-ttttaggctataaaa-gagcagctagcagacatatctaatcatcttttgttcttggaaattctaagtgacaattatttctttaaat 168252  T
263 aaa-agttc-ttattttcttgttatttatttttatgt 297  Q
    |||   ||| |||||||||||||||||| ||||||||    
168253 aaattcttctttattttcttgttatttacttttatgt 168289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1323 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1323
Description:

Target: scaffold1323; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 1955 - 1898
Alignment:
244 gacaattatttctttgaataaaagttc----ttattttcttgttatttatttttatgt 297  Q
    ||||||| |||||||||||||||||||    ||| |||||||||||||| ||||||||    
1955 gacaattgtttctttgaataaaagttcacctttactttcttgttatttacttttatgt 1898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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