View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9674_1 (Length: 1295)
Name: NF9674_1
Description: NF9674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9674_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 1018; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 1018; E-Value: 0
Query Start/End: Original strand, 113 - 1274
Target Start/End: Original strand, 50648418 - 50649582
Alignment:
| Q |
113 |
gttcggaactctcatgcaccagttcgatttaatattggttcagttcatttcagcaattcggttcggttcaacagtgtttttgcccatccctaagcttaca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
50648418 |
gttcggaactctcatgcaccagttcgatttaatattggttcagttcatttcagcaattcggtttggttcaacagtgtttttgcccatccctaagcttaca |
50648517 |
T |
|
| Q |
213 |
gattcgcacacataactagttgtttttagacacctttcattgtttaaccaaagaagagagtctcatttctttctctgctcctccaca---caaagataca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | | || |||||||||| |
|
|
| T |
50648518 |
gattcgcacacataactagttgtttttagacacctttcattgtttaaccaaagaagagagtctcatttctttctcttctctttctcatcccaaagataca |
50648617 |
T |
|
| Q |
310 |
atcaactttgggtaaccataatttgttatttttgttaaaatcaaatttgactggatnnnnnnnntgcgtggatggctcaaatcctcccaagctccccgtg |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
50648618 |
gtcaactttgggtaaccataatttgttatttttgttaaaatcaaatttgactggataaaaaaaatgcgtggatggctcaaatcctcccaagctccccgtg |
50648717 |
T |
|
| Q |
410 |
cagtaaattttaaaacatacgacatagaccacatattcattcaagagccaagaaatttgttaaaaaggacttccgaagtttcttacaaagattggaaggg |
509 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
50648718 |
cagtaaattttaaaacagacgacatagaccacatattcattcaagagccaagaaatttgttaaaaaggacttgcgaagtttcttacaaagattggaaggg |
50648817 |
T |
|
| Q |
510 |
aagattattaaaatattttagacgcaaaagaaccaaatgtttatgaaaccaaattttcacccgtgctaatcaaggcgatggagatgatgagattgacaca |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50648818 |
aagattattaaaatattttagacgcaaaagaaccagatgtttatgaaaccaaattttcacccgtgctaatcaaggcgatggagatgatgagattgacaca |
50648917 |
T |
|
| Q |
610 |
tataaaacaaattgtagcatggaaatataagttaagggaatttcaaaaacatgaaacagttcaggcacaacatatgtctacatatcgattcctcaggtaa |
709 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
50648918 |
tataaaacaaactgtagcatggaaatataagttaaggggatttcaaaaacatgaaacagttcaggcacaacatatgtctacatatcgaatcctcaggtaa |
50649017 |
T |
|
| Q |
710 |
taaacatatacattatatatatagttccaatnnnnnnnnnnnnnnngtaagacgttctttagcataaaggctgcaactcaataccatccactagctaatc |
809 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50649018 |
taaacatatacattatatatatagctccaatcaaaaatgtaaaaaagtaagacgttctttagcataaaggctgcaactcaataccatccactagctaatc |
50649117 |
T |
|
| Q |
810 |
caacaatcttcaagctccctaaagaaacagacttctgaattcaccatttgctagttggcataactgattgtaagagttgacatctacaaagaaatacaaa |
909 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50649118 |
caacaatcttcaagctccctaaagaaacagacttctgaattcaccatttgctagttggcataactgattgtaagagttgacatctacaaagaaatacaaa |
50649217 |
T |
|
| Q |
910 |
tacaaatcaaaatcaacataagtaggtaaacatcagaacaatggaaatttaaaagaccaaaaagtagtgtctgattctaatttgggtgtttatgttgtga |
1009 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
50649218 |
tacaaatcaaaatcaacataagtaggtaaacatcagaacaatggaaatttaaaagaccaaaaagtagtgtctgattctaatttggctgtttatgttgtaa |
50649317 |
T |
|
| Q |
1010 |
acaagatgattgacaaacaacatttactatgtgacaattttcttctttttcaaaatttaaaagtaatatactttatcgagaacaaaaacacaaatcaaca |
1109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50649318 |
acaaaatgattgacaaacaacatttactatgtgacaattttcttctttttcaaaatttaaaagtaatatactttatcgagaacaaaaacacaaatcaaca |
50649417 |
T |
|
| Q |
1110 |
aaactaccataacgaaaacaggtaagaaaattatatagataaacacaataatgcttcataccaaatgtggcaccaaagtcagtcaatatttcagcacgaa |
1209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50649418 |
aaactaccataacgaaaacaggtaagaaaattatatagataaacacaataatgcttcataccaaatgtggcaccaaagtcagtcaatatttcagcacgaa |
50649517 |
T |
|
| Q |
1210 |
tagagttgttactttcagcaatgccaataacctcaacataattcatgacagggacttgtgatgat |
1274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50649518 |
tagagttgttactttcagcaatgccaataacctcaacataattcatgacagggacttgtgatgat |
50649582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 5e-90
Query Start/End: Original strand, 998 - 1274
Target Start/End: Original strand, 50659718 - 50659994
Alignment:
| Q |
998 |
tttatgttgtgaacaagatgattgacaaacaacatttactatgtgacaattttcttctttttcaaaatttaaaagtaatatactttatcgagaacaaaaa |
1097 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| |||||| |||| |||| |||||||||||||||||||||| |||| || || || || |||||||| |
|
|
| T |
50659718 |
tttaagttgtgaacaaaatgattgacaaacgccatttaatatgcgacagttttcttctttttcaaaatttagaagttccctaattaattgataacaaaaa |
50659817 |
T |
|
| Q |
1098 |
cacaaatcaacaaaactaccataacgaaaacaggtaagaaaattatatagataaacacaataatgcttcataccaaatgtggcaccaaagtcagtcaata |
1197 |
Q |
| |
|
|| || ||||||| ||||||||||| |||||| ||||||||| |||||||||||| |||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
50659818 |
cagaattcaacaagactaccataacaaaaacaagtaagaaaactatatagataaaaacaatagtgcttcttaccaaatgtggcaccaaagtcagtcaata |
50659917 |
T |
|
| Q |
1198 |
tttcagcacgaatagagttgttactttcagcaatgccaataacctcaacataattcatgacagggacttgtgatgat |
1274 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50659918 |
tttcagcatggatagagttgttactttcagcaatgccaataacctcaacataattcatgacagggacttgtgatgat |
50659994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 763 - 903
Target Start/End: Original strand, 50659553 - 50659693
Alignment:
| Q |
763 |
gttctttagcataaaggctgcaactcaataccatccactagctaatccaacaatcttcaagctccctaaagaaacagacttctgaattcaccatttgcta |
862 |
Q |
| |
|
|||||||||||| || |||||| |||| |||||| | ||| | ||| ||||||||||| ||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
50659553 |
gttctttagcatgaacattgcaacctaatatcatccagttgctgacccagcaatcttcaagatccctaaagaaacagacttttgcattcaccatttgcta |
50659652 |
T |
|
| Q |
863 |
gttggcataactgattgtaagagttgacatctacaaagaaa |
903 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50659653 |
gttggcataactgattgtaagagttgacatctacaaagaaa |
50659693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 50648288 - 50648346
Alignment:
| Q |
29 |
ctcagttcgttttggaccaagttcgcaagagaggttgtgtgccttctagttccttaaac |
87 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50648288 |
ctcagtttgttttggaccaagttcgcaagagaggttgtgtgccttctagttccttaaac |
50648346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 448 - 508
Target Start/End: Original strand, 50642745 - 50642805
Alignment:
| Q |
448 |
attcaagagccaagaaatttgttaaaaaggacttccgaagtttcttacaaagattggaagg |
508 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
50642745 |
attcaatagccaataaatttgttaaaaaggactagcaaagtttcttacaaagattggaagg |
50642805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 180
Target Start/End: Original strand, 23777358 - 23777391
Alignment:
| Q |
147 |
ttggttcagttcatttcagcaattcggttcggtt |
180 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
23777358 |
ttggttcagttcatttcagcaattcagttcggtt |
23777391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University