View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9674_2 (Length: 654)
Name: NF9674_2
Description: NF9674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9674_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 215 - 627
Target Start/End: Complemental strand, 813182 - 812771
Alignment:
| Q |
215 |
atttcgattaccttcttcattttgtaacatgatgaatgggaacagtttacacatgcaggacgaagaaatatttattctgaatttgaaggtttatatgtag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
813182 |
atttcgattaccttcttcattttgtaacatgatgaatgggaacagtttacacatccaggaccaagaaatatttattctgaatttgaaggtttatatgtag |
813083 |
T |
|
| Q |
315 |
tttgtcaaagaaaaagtttgannnnnnnatggcacaaatttataatcatgttatgttatgcaatggagtagtagaacagggttaacttcatttctttttc |
414 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
813082 |
tttgtcaaagaaaaagtttgatttttttatgacacaaatttataatcatgttatgtgacgcaatggagtagtagaacagggttagcttcatttctttttc |
812983 |
T |
|
| Q |
415 |
atatcttcaacatgtttaattgggttgtgttttgatcttgtcaaatctcaatttatttgannnnnnnatgaatgatttgtgggtttcaaacttacaattt |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
812982 |
atatcttcaacatgtttaattgggttgtgttttcatcttgtcaaatctcaatttatttgatttttttatcaatgatttgtgggtttcaaacttacaattt |
812883 |
T |
|
| Q |
515 |
catttttgtgtttttcatgtcatgttgtaagtaaaatgaatttgatttccattaccttcttcaatcttctccctcttgcgcagtcaaagaactattttga |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
812882 |
gatttttgtgtttttcatgtcatgttgtaagtaaaatgaatttgatttccattaccttcttc-atcttctccctcttgcgcagtcaaagaactattttga |
812784 |
T |
|
| Q |
615 |
ttttgtaataaat |
627 |
Q |
| |
|
||||||||||||| |
|
|
| T |
812783 |
ttttgtaataaat |
812771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 813313 - 813234
Alignment:
| Q |
34 |
aagaagattgcataagattttactatttcttccgtgaaatttggagtttgaaatatgtatgtatgtgtcaattactagga |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
813313 |
aagaagattgcataagattttactatttcttccatgaaatttggagtttgaaatatgtatgtatgtgtcaattactagga |
813234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University