View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9674_4 (Length: 410)
Name: NF9674_4
Description: NF9674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9674_4 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 50648743 - 50648418
Alignment:
| Q |
1 |
tatgtcgtatgttttaaaatttactgcacggggagcttgggaggatttgagccatccacgcannnnnnnnatccagtcaaatttgattttaacaaaaata |
100 |
Q |
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| T |
50648743 |
tatgtcgtctgttttaaaatttactgcacggggagcttgggaggatttgagccatccacgcattttttttatccagtcaaatttgattttaacaaaaata |
50648644 |
T |
|
| Q |
101 |
acaaattatggttacccaaagttgattgtatctttgggatgagaaagagaagagaaagaaatgagactctcttctttggttaaacaatgaaaggtgtcta |
200 |
Q |
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| T |
50648643 |
acaaattatggttacccaaagttgactgtatctttgggatgagaaagagaagagaaagaaatgagactctcttctttggttaaacaatgaaaggtgtcta |
50648544 |
T |
|
| Q |
201 |
aaaacaactagttatgtgtgcgaatctgtaagcttagggatgggcaaaaacactgttgaaccgaaccgaattgctgaaatgaactgaaccaatattaaat |
300 |
Q |
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| T |
50648543 |
aaaacaactagttatgtgtgcgaatctgtaagcttagggatgggcaaaaacactgttgaaccaaaccgaattgctgaaatgaactgaaccaatattaaat |
50648444 |
T |
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| Q |
301 |
cgaactggtgcatgagagttccgaac |
326 |
Q |
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| T |
50648443 |
cgaactggtgcatgagagttccgaac |
50648418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 352 - 410
Target Start/End: Complemental strand, 50648346 - 50648288
Alignment:
| Q |
352 |
gtttaaggaactagaaggcacacaacctctcttgcgaacttggtccaaaacgaactgag |
410 |
Q |
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| T |
50648346 |
gtttaaggaactagaaggcacacaacctctcttgcgaacttggtccaaaacaaactgag |
50648288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 23777391 - 23777358
Alignment:
| Q |
259 |
aaccgaaccgaattgctgaaatgaactgaaccaa |
292 |
Q |
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| T |
23777391 |
aaccgaactgaattgctgaaatgaactgaaccaa |
23777358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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