View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9674_6 (Length: 359)
Name: NF9674_6
Description: NF9674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9674_6 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 39577923 - 39577595
Alignment:
| Q |
1 |
gagacggtgcaatatctttttcttttcctattttccattacaaatagaatagctaataacacagtggatgaacttttgacatgaaaatatgcataggcta |
100 |
Q |
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| T |
39577923 |
gagacggtgcaatatctttttcttttcctattttccattacaaatagaatagctaataacacagtggatgaacttttgacatgaaaatatgcataggcta |
39577824 |
T |
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| Q |
101 |
tttcaactgaaggcaagaaagcaaatcttgtaatagattatatattaaaggtaaaaattcgtacactaaaagccttctttgatcttcattaagtaacaat |
200 |
Q |
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| T |
39577823 |
tttcaactgaaggcaagaaagcaaatcttgtaatagattatatattaaaggtaaaaattcgtacact--aagccttctttgatcttcgttaagtaacaat |
39577726 |
T |
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| Q |
201 |
taaatttatagtttattggctttgtatgttcagattttgggactagagacctgtgcagaacctgtggtgggaaatgcaatgttaagaggtatctctggag |
300 |
Q |
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| T |
39577725 |
taaatttatagtttattggctttgtatgttcagattttgggactagagacctgtgcagatactgtggtgggaaatgcaatgttaagaggtatctctggag |
39577626 |
T |
|
| Q |
301 |
gacaaaggaaacgggttacgacaggtaaaac |
331 |
Q |
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| T |
39577625 |
gacaaaggaaacgggttacgacaggtaaaac |
39577595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 229 - 330
Target Start/End: Complemental strand, 39541833 - 39541732
Alignment:
| Q |
229 |
ttcagattttgggactagagacctgtgcagaacctgtggtgggaaatgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaa |
328 |
Q |
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| T |
39541833 |
ttcagattttgggactagagatatgtgctgatactgttgtaggaaatgcaatgttacgaggtatctctggtggacaaaagaaacgcgttacaacaggtaa |
39541734 |
T |
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| Q |
329 |
aa |
330 |
Q |
| |
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|| |
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| T |
39541733 |
aa |
39541732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 252 - 331
Target Start/End: Complemental strand, 39592151 - 39592072
Alignment:
| Q |
252 |
tgtgcagaacctgtggtgggaaatgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac |
331 |
Q |
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| T |
39592151 |
tgtgcagatactgtggtgggaaatgaaatgttaagaggtatttctggaggacaaagaaaacgtgtaacgacaggtaaaac |
39592072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 235 - 331
Target Start/End: Original strand, 39334732 - 39334828
Alignment:
| Q |
235 |
ttttgggactagagacctgtgcagaacctgtggtgggaaatgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac |
331 |
Q |
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| T |
39334732 |
ttttgggactagagatatgtgctgatactgttgtgggaaatgcaatgataagaggtatctctggcggacaaaagaaacgccttacaacaggtaaaac |
39334828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 235 - 331
Target Start/End: Original strand, 39345996 - 39346092
Alignment:
| Q |
235 |
ttttgggactagagacctgtgcagaacctgtggtgggaaatgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac |
331 |
Q |
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| T |
39345996 |
ttttgggactagagatatgtgctgatactgttgtgggaaatgcaatgataagaggtatctctggcggacaaaagaaacgccttacaacaggtaaaac |
39346092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 330
Target Start/End: Complemental strand, 39551088 - 39550989
Alignment:
| Q |
231 |
cagattttgggactagagacctgtgcagaacctgtggtgggaaatgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaa |
330 |
Q |
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| T |
39551088 |
cagattttgggactagagatatgtgctgatactgttgtaggaaatgcaatgttacgaggtatctctggtggacaaaagaaacgcgttacaactggtaaaa |
39550989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 332
Target Start/End: Original strand, 39360540 - 39360637
Alignment:
| Q |
235 |
ttttgggactagagacctgtgcagaacctgtggtgggaaatgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaact |
332 |
Q |
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| T |
39360540 |
ttttgggactagagatatgtgctgatactgttgtgggaaatgcaatgataagagctatctctggcggacaaaagaaacgccttacaacaggtaaaact |
39360637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 39567840 - 39567779
Alignment:
| Q |
270 |
ggaaatgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac |
331 |
Q |
| |
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||||||||||||||| ||||||||||||| ||||||| |||||| |||| ||||||||||| |
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| T |
39567840 |
ggaaatgcaatgttacgaggtatctctggtggacaaaagaaacgccttacaacaggtaaaac |
39567779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 39592318 - 39592255
Alignment:
| Q |
95 |
aggctatttcaactgaaggcaagaaagcaaatcttgtaatagattatatattaaaggtaaaaat |
158 |
Q |
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| T |
39592318 |
aggctgttgcaactgaaggccagaaagaaaatctagtagtagattatattctaaaggtaaaaat |
39592255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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