View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9675_high_10 (Length: 298)
Name: NF9675_high_10
Description: NF9675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9675_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 32361193 - 32360943
Alignment:
| Q |
1 |
ctattacaaacctcaaatttaaaggacctctgaggtgatttaacgacaatttattgaagtattacaattcaatctccttattaacttgttttgttcataa |
100 |
Q |
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||||||||||| ||||||||||||||| |||| || ||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
32361193 |
ctattacaaacttcaaatttaaaggacttctggtgtaatttagcgacaatttatcaaagtatgacaattcaatctccttattaacttgttttgtacataa |
32361094 |
T |
|
| Q |
101 |
tagnnnnnnnnctttgagattttatcgatgagtcatgtatatgattgctattttgaaacaataggtcaatttggagggctagcccgaaacatccttcata |
200 |
Q |
| |
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||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32361093 |
tagttttttt-ctttgagattttatcga-gagtcatgtatataattgctattttgaaacaataggtcaatttggagggctagcccgaaacatcattcata |
32360996 |
T |
|
| Q |
201 |
ctagggtggtggctgttggagctacattggtgtatcttgtactattgttcatt |
253 |
Q |
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|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32360995 |
ctagggtggtggctgttggagctacattagtgtatcttgtactattgttcatt |
32360943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 17136869 - 17136838
Alignment:
| Q |
1 |
ctattacaaacctcaaatttaaaggacctctg |
32 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
17136869 |
ctattacaaacctcaaatttaaaggacctctg |
17136838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 27128187 - 27128219
Alignment:
| Q |
1 |
ctattacaaacctcaaatttaaaggacctctga |
33 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
27128187 |
ctattacaaacctcaaacttaaaggacctctga |
27128219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 28814110 - 28814142
Alignment:
| Q |
1 |
ctattacaaacctcaaatttaaaggacctctga |
33 |
Q |
| |
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|||||||||||||||||||||||||||| |||| |
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| T |
28814110 |
ctattacaaacctcaaatttaaaggacccctga |
28814142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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