View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9675_high_15 (Length: 255)
Name: NF9675_high_15
Description: NF9675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9675_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 43376482 - 43376249
Alignment:
| Q |
19 |
acaacagttatattcaaatatcaatagttattatggaattgaaagacacaaacnnnnnnntaataatgattttgttacaaacatgaataagagagaggga |
118 |
Q |
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| T |
43376482 |
acaacagttatattcaaatatcaatagttattatggaattgaaagacacaaacaaaaaataaataatgattttgttacaaacatgaataagagagaggga |
43376383 |
T |
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| Q |
119 |
gatggagggtcttacttgtgatgataagaatgtgaaattgtaacagcaatggttgaaattattaaaaaagaatgattacgtagaatgcagtgattgatta |
218 |
Q |
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| T |
43376382 |
gatggagggtcttacttgtgatgataagaatgtaaaattgtaacagcaatggttgaaattattaaaaaagaatgattacgtagaatgcagggattgatta |
43376283 |
T |
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| Q |
219 |
gtgggaattaaggtagatcgggaactccaaactc |
252 |
Q |
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| T |
43376282 |
gtgggaattaaggtagatcgggaactcctaactc |
43376249 |
T |
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