View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9675_high_17 (Length: 248)

Name: NF9675_high_17
Description: NF9675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9675_high_17
NF9675_high_17
[»] chr8 (5 HSPs)
chr8 (1-121)||(13190371-13190491)
chr8 (117-153)||(17818101-17818137)
chr8 (118-157)||(27637064-27637103)
chr8 (117-157)||(10761178-10761218)
chr8 (117-157)||(34845591-34845631)
[»] chr2 (5 HSPs)
chr2 (119-157)||(34831488-34831526)
chr2 (111-157)||(20962294-20962340)
chr2 (120-157)||(16303620-16303657)
chr2 (119-151)||(25104082-25104114)
chr2 (121-157)||(42336058-42336094)
[»] chr7 (9 HSPs)
chr7 (117-153)||(20089142-20089178)
chr7 (117-156)||(44448662-44448701)
chr7 (112-157)||(15093707-15093752)
chr7 (120-153)||(15994785-15994818)
chr7 (121-153)||(21022388-21022420)
chr7 (121-153)||(21443864-21443896)
chr7 (121-153)||(21522114-21522146)
chr7 (117-157)||(31079105-31079145)
chr7 (117-157)||(41745084-41745124)
[»] chr6 (2 HSPs)
chr6 (121-157)||(17158114-17158150)
chr6 (117-153)||(2270447-2270483)
[»] chr5 (3 HSPs)
chr5 (118-156)||(30126441-30126479)
chr5 (117-157)||(12369714-12369754)
chr5 (117-157)||(29690715-29690755)
[»] chr3 (6 HSPs)
chr3 (111-153)||(48628135-48628177)
chr3 (120-153)||(5572298-5572331)
chr3 (117-157)||(13439905-13439943)
chr3 (117-153)||(300512-300548)
chr3 (117-157)||(16343631-16343671)
chr3 (117-157)||(38703325-38703364)
[»] scaffold0098 (1 HSPs)
scaffold0098 (117-157)||(4210-4250)
[»] chr4 (2 HSPs)
chr4 (121-153)||(4102786-4102818)
chr4 (121-157)||(18164887-18164923)
[»] chr1 (3 HSPs)
chr1 (121-153)||(14910101-14910133)
chr1 (117-153)||(21770749-21770785)
chr1 (117-157)||(31883448-31883487)


Alignment Details
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 13190371 - 13190491
Alignment:
Q  1 aactaaaataaaggtaaaagcagtggctgctacgtttggtgaaaggaggttaaaaacttcggtagttcaannnnnnnatcttgttttagaactttagttg 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||       ||||||||||||||||| |||||    
T  13190371 aactaaaataaaggtaaaagcagtggctgctacgttttgtgaaaggaggttataaacttcggtagttcaatttttttatcttgttttagaacttcagttg 13190470  T
Q  101 caatattgtattttgctttta 121  Q
    |||||||||||||||||||||    
T  13190471 caatattgtattttgctttta 13190491  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 17818137 - 17818101
Alignment:
Q  117 ttttagggttaatagtgttttattcccctgtaatata 153  Q
    ||||||||||||||||||||||| |||||||||||||    
T  17818137 ttttagggttaatagtgttttatccccctgtaatata 17818101  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 157
Target Start/End: Original strand, 27637064 - 27637103
Alignment:
Q  118 tttagggttaatagtgttttattcccctgtaatatatgtc 157  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  27637064 tttagggttaatagtgttttatccgcctgtaatatatgtc 27637103  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 10761218 - 10761178
Alignment:
Q  117 ttttagggttaatagtgttttattcccctgtaatatatgtc 157  Q
    |||||||||||||||||||||   |||||||||||||||||    
T  10761218 ttttagggttaatagtgtttttcacccctgtaatatatgtc 10761178  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 34845631 - 34845591
Alignment:
Q  117 ttttagggttaatagtgttttattcccctgtaatatatgtc 157  Q
    ||||||| |||||||||||||| | ||||||||||||||||    
T  34845631 ttttaggattaatagtgttttaattccctgtaatatatgtc 34845591  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 157
Target Start/End: Original strand, 34831488 - 34831526
Alignment:
Q  119 ttagggttaatagtgttttattcccctgtaatatatgtc 157  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  34831488 ttagggttaatagtgttttatccccctgtaatatatgtc 34831526  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 20962340 - 20962294
Alignment:
Q  111 ttttgcttttagggttaatagtgttttattcccctgtaatatatgtc 157  Q
    ||||| |||||||||||||||||||||   |||||||||||||||||    
T  20962340 ttttgattttagggttaatagtgtttttcacccctgtaatatatgtc 20962294  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 16303620 - 16303657
Alignment:
Q  120 tagggttaatagtgttttattcccctgtaatatatgtc 157  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  16303620 tagggttaatagtgttttactcccctataatatatgtc 16303657  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 151
Target Start/End: Complemental strand, 25104114 - 25104082
Alignment:
Q  119 ttagggttaatagtgttttattcccctgtaata 151  Q
    ||||||||||||||||||||| |||||||||||    
T  25104114 ttagggttaatagtgttttatccccctgtaata 25104082  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 42336094 - 42336058
Alignment:
Q  121 agggttaatagtgttttattcccctgtaatatatgtc 157  Q
    ||||||||||||||||| | |||||||||||||||||    
T  42336094 agggttaatagtgttttttacccctgtaatatatgtc 42336058  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 20089142 - 20089178
Alignment:
Q  117 ttttagggttaatagtgttttattcccctgtaatata 153  Q
    ||||||||||||||||||||||||||||| |||||||    
T  20089142 ttttagggttaatagtgttttattcccctataatata 20089178  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 44448701 - 44448662
Alignment:
Q  117 ttttagggttaatagtgttttattcccctgtaatatatgt 156  Q
    |||| |||||||||||||||||| ||||||||||||||||    
T  44448701 tttttgggttaatagtgttttatccccctgtaatatatgt 44448662  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 15093752 - 15093707
Alignment:
Q  112 tttgcttttagggttaatagtgttttattcccctgtaatatatgtc 157  Q
    |||||||| |||||||||||||||||   |||||||||||||||||    
T  15093752 tttgctttcagggttaatagtgtttttcacccctgtaatatatgtc 15093707  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 15994818 - 15994785
Alignment:
Q  120 tagggttaatagtgttttattcccctgtaatata 153  Q
    |||||||||||||||||||| |||||||||||||    
T  15994818 tagggttaatagtgttttatccccctgtaatata 15994785  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 21022388 - 21022420
Alignment:
Q  121 agggttaatagtgttttattcccctgtaatata 153  Q
    ||||||||||||| |||||||||||||||||||    
T  21022388 agggttaatagtgctttattcccctgtaatata 21022420  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 21443864 - 21443896
Alignment:
Q  121 agggttaatagtgttttattcccctgtaatata 153  Q
    ||||||||||||||||||| |||||||||||||    
T  21443864 agggttaatagtgttttatccccctgtaatata 21443896  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 21522146 - 21522114
Alignment:
Q  121 agggttaatagtgttttattcccctgtaatata 153  Q
    ||||||||||||||||||| |||||||||||||    
T  21522146 agggttaatagtgttttatccccctgtaatata 21522114  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 31079105 - 31079145
Alignment:
Q  117 ttttagggttaatagtgttttattcccctgtaatatatgtc 157  Q
    |||||||||||||||||||||   |||||||||||||||||    
T  31079105 ttttagggttaatagtgtttttcacccctgtaatatatgtc 31079145  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 41745084 - 41745124
Alignment:
Q  117 ttttagggttaatagtgttttattcccctgtaatatatgtc 157  Q
    |||||||||||||||||||||   |||||||||||||||||    
T  41745084 ttttagggttaatagtgtttttcacccctgtaatatatgtc 41745124  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 17158114 - 17158150
Alignment:
Q  121 agggttaatagtgttttattcccctgtaatatatgtc 157  Q
    ||||||||||||||||||| |||||||||||||||||    
T  17158114 agggttaatagtgttttatacccctgtaatatatgtc 17158150  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 2270447 - 2270483
Alignment:
Q  117 ttttagggttaatagtgttttattcccctgtaatata 153  Q
    ||||||||||||||||||||||  |||||||||||||    
T  2270447 ttttagggttaatagtgttttacccccctgtaatata 2270483  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 30126441 - 30126479
Alignment:
Q  118 tttagggttaatagtgttttattcccctgtaatatatgt 156  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  30126441 tttagggttaatagtgttttttacccctgtaatatatgt 30126479  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 12369754 - 12369714
Alignment:
Q  117 ttttagggttaatagtgttttattcccctgtaatatatgtc 157  Q
    ||||||||||||||||||| | | |||||||||||||||||    
T  12369754 ttttagggttaatagtgttctttacccctgtaatatatgtc 12369714  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 29690755 - 29690715
Alignment:
Q  117 ttttagggttaatagtgttttattcccctgtaatatatgtc 157  Q
    |||||||||||||||||||||   |||||||||||||||||    
T  29690755 ttttagggttaatagtgtttttcacccctgtaatatatgtc 29690715  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 153
Target Start/End: Original strand, 48628135 - 48628177
Alignment:
Q  111 ttttgcttttagggttaatagtgttttattcccctgtaatata 153  Q
    |||||||||||||||||||||||||||   |||||||||||||    
T  48628135 ttttgcttttagggttaatagtgtttttcacccctgtaatata 48628177  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 5572331 - 5572298
Alignment:
Q  120 tagggttaatagtgttttattcccctgtaatata 153  Q
    ||||||||||||||||||| ||||||||||||||    
T  5572331 tagggttaatagtgttttactcccctgtaatata 5572298  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 13439943 - 13439905
Alignment:
Q  117 ttttagggttaatagtgttttattcccctgtaatatatgtc 157  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  13439943 ttttagggttaatagtgtttta--cccctgtaatatatgtc 13439905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 300548 - 300512
Alignment:
Q  117 ttttagggttaatagtgttttattcccctgtaatata 153  Q
    ||||||||||||||||||||||  |||||||||||||    
T  300548 ttttagggttaatagtgttttacccccctgtaatata 300512  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 16343631 - 16343671
Alignment:
Q  117 ttttagggttaatagtgttttattcccctgtaatatatgtc 157  Q
    |||||||||||||||||||||   |||||||||||||||||    
T  16343631 ttttagggttaatagtgtttttaacccctgtaatatatgtc 16343671  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 38703364 - 38703325
Alignment:
Q  117 ttttagggttaatagtgttttattcccctgtaatatatgtc 157  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  38703364 ttttagggttaatagtgtttta-ccccctgtaatatatgtc 38703325  T

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Target: scaffold0098 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 4250 - 4210
Alignment:
Q  117 ttttagggttaatagtgttttattcccctgtaatatatgtc 157  Q
    |||||||||||||||||||||   |||||||||||||||||    
T  4250 ttttagggttaatagtgtttttcacccctgtaatatatgtc 4210  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 4102786 - 4102818
Alignment:
Q  121 agggttaatagtgttttattcccctgtaatata 153  Q
    ||||||||||||||||||| |||||||||||||    
T  4102786 agggttaatagtgttttatccccctgtaatata 4102818  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 18164887 - 18164923
Alignment:
Q  121 agggttaatagtgttttattcccctgtaatatatgtc 157  Q
    ||||||||||||||||||  |||||||||||||||||    
T  18164887 agggttaatagtgttttacccccctgtaatatatgtc 18164923  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 14910133 - 14910101
Alignment:
Q  121 agggttaatagtgttttattcccctgtaatata 153  Q
    |||||||||||||||||| ||||||||||||||    
T  14910133 agggttaatagtgttttactcccctgtaatata 14910101  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 21770749 - 21770785
Alignment:
Q  117 ttttagggttaatagtgttttattcccctgtaatata 153  Q
    ||||||||||||||||||||||  |||||||||||||    
T  21770749 ttttagggttaatagtgttttacccccctgtaatata 21770785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 31883448 - 31883487
Alignment:
Q  117 ttttagggttaatagtgttttattcccctgtaatatatgtc 157  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  31883448 ttttagggttaatagtgtttta-ccccctgtaatatatgtc 31883487  T

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