View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9675_high_19 (Length: 245)
Name: NF9675_high_19
Description: NF9675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9675_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 4488721 - 4488503
Alignment:
| Q |
11 |
agaagcagagagtataaagaatttgaggctcaattccggagaacgttttggtcaaagaatccagaggaagataaccgatacccaggattttatgctctac |
110 |
Q |
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| T |
4488721 |
agaagcagggagtataaagaatttgaggctcaattccggagaacgttttggtcaaagaatccagaggaagataaccgatacccaggattttatgctctac |
4488622 |
T |
|
| Q |
111 |
aagcatatgatagcattaacattgtaactcaagctttgaacagaatgaccagtaggaagaatagcagcccaaagactttactaagagaaatactttcttg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4488621 |
aagcatatgatagcattaacattgtaactcaagctttgaacagaatgaccagtaggaagaatagcagcccaaagactttactaagagaaatactttcttg |
4488522 |
T |
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| Q |
211 |
caatttcattggtttaagt |
229 |
Q |
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||||||| ||||||||||| |
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| T |
4488521 |
caatttccttggtttaagt |
4488503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 4483753 - 4483535
Alignment:
| Q |
11 |
agaagcagagagtataaagaatttgaggctcaattccggagaacgttttggtcaaagaatccagaggaagataaccgatacccaggattttatgctctac |
110 |
Q |
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|
|||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4483753 |
agaagcagggagtataaagaatttaaggctcaattccagagaacgttttggtcaaagaatccagaggaagataaccgatacccaggattttatgctctac |
4483654 |
T |
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| Q |
111 |
aagcatatgatagcattaacattgtaactcaagctttgaacagaatgaccagtaggaagaatagcagcccaaagactttactaagagaaatactttcttg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| ||||||| ||| | |
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| T |
4483653 |
aagcatatgatagcattaacattgtaactcaagctttcaacagaatgaccagtaggaacaatagcagcccaaaatttttactaagcgaaatacagtctag |
4483554 |
T |
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| Q |
211 |
caatttcattggtttaagt |
229 |
Q |
| |
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||||||||||||||||||| |
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| T |
4483553 |
caatttcattggtttaagt |
4483535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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