View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9675_high_4 (Length: 395)
Name: NF9675_high_4
Description: NF9675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9675_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 36277244 - 36277409
Alignment:
| Q |
1 |
tctggaaaagctctggcgggaaagttgatgcccttgtttctggtataggaaccggaggtacagtaacaggtgctggaaaatatttgaaagagcagaaccc |
100 |
Q |
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| T |
36277244 |
tctggaaaagctctggtgggaaagttgatgcccttgtttctggtataggaaccggaggtacagtaacaggtgctggaaaatatttgaaagagcagaaccc |
36277343 |
T |
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| Q |
101 |
tgatattaaggttaggattatgattctttaactgtataacattaccttctataaatttctaggcat |
166 |
Q |
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| T |
36277344 |
tgatattaaggttaggattatgattctttaactgtataacattaccttctataaatttctaggcat |
36277409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 229 - 395
Target Start/End: Original strand, 36277472 - 36277638
Alignment:
| Q |
229 |
tccttagctatatggtgtcgaaccacttgaaagtccagtattgtctggagggaaacctggtgagccttccttcttattatttattactatagcaagcttc |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
36277472 |
tccttagctatatggtgtcgaaccacttgaaagtccagtattgtctggagggaaacctggtgagccttccttcttattatttatcactattgcaagcttc |
36277571 |
T |
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| Q |
329 |
attcatatcattgatcttaagttccctaatgcacattgagggaaagtatcacctttaccgatagtat |
395 |
Q |
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| T |
36277572 |
attcatatcattgatcttaagttccctaatgcacattgaggaaaagtatcacctttaccgatagtat |
36277638 |
T |
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