View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9675_low_1 (Length: 719)
Name: NF9675_low_1
Description: NF9675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9675_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 675; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 16 - 702
Target Start/End: Original strand, 44629102 - 44629788
Alignment:
| Q |
16 |
agaccaagatgtgcaagtctatgaagaactccctgatgaagattcttaccacacaaagcttagaagcagcaagttttgtttgtgtccaagtggttatgaa |
115 |
Q |
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| T |
44629102 |
agaccaagatgtgcaagtctatgaagaactccctgatgaagattcttaccacacaaagcttagaagcagcaagttttgtttgtgtccaagtggttatgaa |
44629201 |
T |
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| Q |
116 |
gtagcaagtccaagaatagtggaagctatatttgcagaatgtgtgcctgtattgatttctgatagctatgttccaccctttagtgatgttttgaattgga |
215 |
Q |
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| T |
44629202 |
gtagcaagtccaagaatagtggaagctatatttgcagaatgtgtgcctgtattgatttctgatagctatgttccaccctttagtgatgttttgaattgga |
44629301 |
T |
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| Q |
216 |
aagcattttcagttcaaatagatgtgaaggatattcctaatataaaaaatatactcatggggatttcacagaggcagtacttgaagatgcagaggagagt |
315 |
Q |
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| T |
44629302 |
aagcgttttcagttcaaatagatgtgaaggatattcctaatataaaaaatatactcatggggatttcacagaggcagtacttgaagatgcagaggagagt |
44629401 |
T |
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| Q |
316 |
gaaacaagtgcaaagacattttgttcctaatgagccaccaaagaggtttgatgtatttcatatgactattcattccatttggctcagaaggttgaacgtc |
415 |
Q |
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| T |
44629402 |
gaaacaagtgcaaagacattttgttcctaatgagccaccaaagaggtttgatgtatttcatatgactattcattccatttggctcagaaggttgaacgtc |
44629501 |
T |
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| Q |
416 |
cgtattcatgatgatcagtgatagcagatcctcaagattaacagattttgtaggtatagaaaaatgtttctttcttatacatttgtgaaaacctaaggaa |
515 |
Q |
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| T |
44629502 |
cgtattcatgatgatcagtgatagcagatcctcaagattaacagattttgtaggtatagaaaaatgtttctttcttatacatttgtgaaaacccaaggaa |
44629601 |
T |
|
| Q |
516 |
attagagatttacttagtgttattgcataacagattcattatcattgtgattaattgcttgctgttattataatttgtaaactttttctcattgtaattc |
615 |
Q |
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| T |
44629602 |
attagagatttacttagtattattgcataacagattcattatcattgtgattaattgcttgctgttattataatttgtaaactttttctcattgtaattc |
44629701 |
T |
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| Q |
616 |
tagttctagtaaagggattccatgcttctttctccatattgatattcaaaaattaagcaatgaagtaagaacttctaggtaaacatt |
702 |
Q |
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| T |
44629702 |
tagttctagtaaagggattccatgcttctttctccatattgatattcaaaaattaagcaatgaagtaagaacttctaggtaaacatt |
44629788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 165
Target Start/End: Original strand, 49302273 - 49302353
Alignment:
| Q |
85 |
caagttttgtttgtgtccaagtggttatgaagtagcaagtccaagaatagtggaagctatatttgcagaatgtgtgcctgt |
165 |
Q |
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| T |
49302273 |
caagttctgtctttgtccaagtggttttgaagtggctagcccaagaattgtggaatcaatttatgcagaatgtgtgcctgt |
49302353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 47728019 - 47727967
Alignment:
| Q |
89 |
ttttgtttgtgtccaagtggttatgaagtagcaagtccaagaatagtggaagc |
141 |
Q |
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| T |
47728019 |
ttttgtttgtgtccaagtggatatgaagtggctagtccaagaattgtggaagc |
47727967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 47725853 - 47725777
Alignment:
| Q |
83 |
agcaagttttgtttgtgtccaagtggttatgaagtagcaagtccaagaatagtggaagctatatttgcagaatgtgt |
159 |
Q |
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| T |
47725853 |
agcaagttttgtttgtgccctagtggacatgaagtggcaagtccaagagtggtggaagcaatttatgcaggatgtgt |
47725777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 47705304 - 47705267
Alignment:
| Q |
83 |
agcaagttttgtttgtgtccaagtggttatgaagtagc |
120 |
Q |
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| T |
47705304 |
agcaagttttgcttgtgtccaagtggctatgaagtagc |
47705267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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