View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9675_low_10 (Length: 445)
Name: NF9675_low_10
Description: NF9675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9675_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 19 - 438
Target Start/End: Complemental strand, 47859875 - 47859458
Alignment:
| Q |
19 |
ccttgcatatgtaagtgttccaagtgttgtatataaaattgctacgtagcaaccaaaataactatatatatatgcagattgcatatatagctggagttgt |
118 |
Q |
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| T |
47859875 |
ccttgcatatgtaagtgttccaagtgttgtataaaaaattgctacgtagcaaccaaaataactatatatat--gcagattgcatatatagctggagttgt |
47859778 |
T |
|
| Q |
119 |
ctaatcttatcttgttgattcctttctctattttcattgttttgtgcgtgtcctcttttccataagattttcaaagaacacaacataatcaccaccattt |
218 |
Q |
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| T |
47859777 |
ctaatcttatcttgttgattcctttctctattttcattgttttgtgcgtgtcctcttttccataagattttcaaagaacacaacataatcaccaccattt |
47859678 |
T |
|
| Q |
219 |
acattatagtaacaacctacagaagaaggatcgaccaaaatgattcgaagaacagtgaactttccgagtttaaggaaattgcttcttcgtcctagttatc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47859677 |
acattatagtaacaacctacagaagaaggatcgaccaaaatgattcgaagaacagtgaactttccgagtttaaggaaattgcttcttcgtcctagttatc |
47859578 |
T |
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| Q |
319 |
tgtcttcgtccaaggtgatcaacgttttactttctcattctttgttagtttaattttctcatcaaacgcataacaattttacgtgtttttgtttcttttc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47859577 |
tgtcttcgtccaaggtgatcaacgttttactttctcattctttgttagtttaattttctcatcaaacgcataacaattttacgtgtttttgtttcttttc |
47859478 |
T |
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| Q |
419 |
attataccgtatctctgctt |
438 |
Q |
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|||||||||||||||||||| |
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| T |
47859477 |
attataccgtatctctgctt |
47859458 |
T |
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