View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9675_low_16 (Length: 383)
Name: NF9675_low_16
Description: NF9675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9675_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 2096802 - 2096606
Alignment:
| Q |
7 |
attatcgtgattatgccatatccactttaataccgaacatactataatttttactttttcatatgttagacatgtttagttactttcgagcataattgat |
106 |
Q |
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| T |
2096802 |
attatcgtgattatgccatatccactttaataccgaacatactataatttttactttttaatatgttagacatgtttagttactttcgagcataattgat |
2096703 |
T |
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| Q |
107 |
cttcctccgaaaatcattcttaggtcaaactagaaattaaaatttttatgttgggattgattttaacactcgagtttaccttcaactacattctatc |
203 |
Q |
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| T |
2096702 |
cttcctccgaaaatcattcttaggtcaaactagagattaaagtttttatgttgggattgattttaacactcgagtttaccttcaactacattctatc |
2096606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 286 - 374
Target Start/End: Complemental strand, 2096544 - 2096456
Alignment:
| Q |
286 |
ttgaagctatgttatccaagatttttcaacaatttatacaaacacaaaacatatagaacaaaccaacttactggattattcctctgtgc |
374 |
Q |
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| T |
2096544 |
ttgaagctatgttatccaagatttttcaacaatttatacaaacacaaaacatatagaacaaaccaacttactggattattcctctgtgc |
2096456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 364
Target Start/End: Complemental strand, 2105604 - 2105523
Alignment:
| Q |
282 |
atttttgaagctatgttatccaagatttttcaacaatttatacaaacacaaaacatatagaacaaaccaacttactggattat |
364 |
Q |
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| T |
2105604 |
atttttcatgctatgctatccaagatttttcaacaatttatagaaaca-aaaaaatataaaataaaccgacttactggattat |
2105523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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