View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9675_low_18 (Length: 371)
Name: NF9675_low_18
Description: NF9675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9675_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 359
Target Start/End: Complemental strand, 33452864 - 33452520
Alignment:
| Q |
19 |
aagtctgcatacaatattatatttgtggttaaatcaaattaatattcaaattctgccaagccgtccttagccgtttgttgcaatcccccctcaccctgat |
118 |
Q |
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| T |
33452864 |
aagtctgcatgcaatattatatttgtggttaaatcaaattaatattcaaattctgccaagccgtccatagccgtttgttgcaatcccccctcaccctgat |
33452765 |
T |
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| Q |
119 |
attttatgtgtatatatatat----ctgtatttaatctcttatagaaagtaaccaaattaaacaaagaaagagcaatactagtacttcatacatggctct |
214 |
Q |
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| T |
33452764 |
attttatgtgtatatatatatatatctgtatttaatctcttatagaaagtaaccaaattaaacaaagaaagagcaatactagtacttcatacatggctct |
33452665 |
T |
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| Q |
215 |
ttctcgtgctcttttcctcttttctctcattgctactatcttctcaaccatggctgtggcaaaagattttgtagttggtgatgaaaagggttggactact |
314 |
Q |
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| T |
33452664 |
ttctcgtgctctttttctctttgctctcattgcttccatcttctcaaccatggccgtggcaaaagattttgtagttggagatgaaaagggttggactact |
33452565 |
T |
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| Q |
315 |
ttgtttgattaccaaacttggaccgcaaacaaggtctttcgtctc |
359 |
Q |
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| T |
33452564 |
ttgtttgattaccaaacttggaccgcaaacaaggtctttcgtctc |
33452520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 54 - 359
Target Start/End: Complemental strand, 33442571 - 33442270
Alignment:
| Q |
54 |
aaattaatattcaaattctgccaagccgtccttagccgtttgttgcaatcccccctcaccctgatattttatgtgtatatatatatctgtatttaatctc |
153 |
Q |
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| T |
33442571 |
aaattaatattcaaattctgccaagccgtccttagccgtttgtgacaatcccc--ttgccctgaaattatatgtgtatatatac--ccgtattcaatctc |
33442476 |
T |
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| Q |
154 |
ttatagaaagtaaccaaattaaacaaagaaagagcaatactagtacttcatacatggctctttctcgtgctcttttcctcttttctctcattgctactat |
253 |
Q |
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| T |
33442475 |
ttatattaagtaacaaaattaaacaaagaaagagcaatactagtacttcaactatggctctttctcgtgctcttttcctctttgctttcattgctactat |
33442376 |
T |
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| Q |
254 |
cttctcaaccatggctgtggcaaaagattttgtagttggtgatgaaaagggttggactactttgtttgattaccaaacttggaccgcaaacaaggtcttt |
353 |
Q |
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| T |
33442375 |
cttctcaaccatggctgtggcaaaagattttgtagttggtgatgaaaagggttggactactttgtttgattaccaaacttggaccgcaaacaaggtcttt |
33442276 |
T |
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| Q |
354 |
cgtctc |
359 |
Q |
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|||||| |
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| T |
33442275 |
cgtctc |
33442270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 207 - 359
Target Start/End: Complemental strand, 33400207 - 33400055
Alignment:
| Q |
207 |
atggctctttctcgtgctcttttcctcttttctctcattgctactatcttctcaaccatggctgtggcaaaagattttgtagttggtgatgaaaagggtt |
306 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
33400207 |
atggctctttctcgttctcttttcctctttgctctcattgctactatcttctcaaccatggctgtggcaaaagattttgtagttggagatgaaagtggtt |
33400108 |
T |
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| Q |
307 |
ggactactt-tgtttgattaccaaacttggaccgcaaacaaggtctttcgtctc |
359 |
Q |
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| T |
33400107 |
ggac-acttggggttgattaccaagcttgggctgcaaacaaggtctttcgtctc |
33400055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 207 - 299
Target Start/End: Complemental strand, 33397122 - 33397030
Alignment:
| Q |
207 |
atggctctttctcgtgctcttttcctcttttctctcattgctactatcttctcaaccatggctgtggcaaaagattttgtagttggtgatgaa |
299 |
Q |
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|||||||||||||||| |||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33397122 |
atggctctttctcgtgttctttttctctttgctctcattgctactatcttttcaaccatggctgtggcaaaagattttgtagttggagatgaa |
33397030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 33442633 - 33442587
Alignment:
| Q |
27 |
atacaatattata-tttgtggttaaatcaaattaatattcaaattct |
72 |
Q |
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|||| |||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
33442633 |
atacgatattataatttgtagttaaatcaaattaatattcaaattct |
33442587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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