View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9675_low_20 (Length: 357)

Name: NF9675_low_20
Description: NF9675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9675_low_20
NF9675_low_20
[»] chr7 (2 HSPs)
chr7 (36-340)||(35764100-35764401)
chr7 (48-112)||(17962924-17962988)
[»] chr5 (4 HSPs)
chr5 (83-211)||(26229766-26229894)
chr5 (83-191)||(23138941-23139049)
chr5 (48-112)||(815613-815677)
chr5 (48-112)||(28688462-28688526)
[»] chr2 (1 HSPs)
chr2 (1-37)||(38584942-38584978)
[»] scaffold0285 (1 HSPs)
scaffold0285 (83-178)||(14821-14916)
[»] chr1 (1 HSPs)
chr1 (99-178)||(23282041-23282120)
[»] chr8 (1 HSPs)
chr8 (118-175)||(23592464-23592521)


Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 36 - 340
Target Start/End: Original strand, 35764100 - 35764401
Alignment:
Q  36 ctaaaatcctcatcacctgacatgagagagtttaggatcttgaagagcttcagagttccaattcaccctcctaatgctccaaaaatcaaagaagtcatct 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35764100 ctaaaatcctcatcacctgacatgagagagtttaggatcttgaagagcttcagagttccaattcaccctcctaatgctccaaaaatcaaagaagtcatct 35764199  T
Q  136 ggtgccctccaatcttccattggataaaagtaaatactgatggggcggcttcaaaacatccccttaatgcttctgctgcaggtgggctgttcagggataa 235  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  35764200 ggtgccctccaatcttccattggataaaagtaaatactgatagggcggcttcaaaacatccccttaatgctt---ctgcaggtgggctgttcagggataa 35764296  T
Q  236 agatggaaattttctaggttgttttgctcaaaacctaggtaatgttaattctttctatgctgaattattggctgctattctagctttagagattgctcaa 335  Q
    || |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35764297 aggtggaaattgtctaggttgttttgctcaaaacctaggtaatgttagttctttctatgctgaattattggctgctattctagctttagaaattgctcaa 35764396  T
Q  336 agaaa 340  Q
    |||||    
T  35764397 agaaa 35764401  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 17962988 - 17962924
Alignment:
Q  48 tcacctgacatgagagagtttaggatcttgaagagcttcagagttccaattcaccctcctaatgc 112  Q
    |||||||| ||||| |||||||| || || ||||| ||||||||||||||  | |||||||||||    
T  17962988 tcacctgatatgagggagtttagcattttaaagagtttcagagttccaatcaagcctcctaatgc 17962924  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 211
Target Start/End: Complemental strand, 26229894 - 26229766
Alignment:
Q  83 cttcagagttccaattcaccctcctaatgctccaaaaatcaaagaagtcatctggtgccctccaatcttccattggataaaagtaaatactgatggggcg 182  Q
    ||||||||| |||||||| |||||||| || || |  ||||| ||||| || ||||  |||||||||||| |||||||||| || || |||||||| ||     
T  26229894 cttcagagtcccaattcatcctcctaaagcccctatcatcaaggaagtgatttggtctcctccaatcttcaattggataaaggtgaacactgatggtgct 26229795  T
Q  183 gcttcaaaacatccccttaatgcttctgc 211  Q
    ||||||||| | || |  |||||||||||    
T  26229794 gcttcaaaaaaccctccaaatgcttctgc 26229766  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 191
Target Start/End: Complemental strand, 23139049 - 23138941
Alignment:
Q  83 cttcagagttccaattcaccctcctaatgctccaaaaatcaaagaagtcatctggtgccctccaatcttccattggataaaagtaaatactgatggggcg 182  Q
    ||||||||| |||||||| |||||||| || || |  ||||| ||||| || ||||  |||||||||||| |||||||||| || || |||||||| ||     
T  23139049 cttcagagtcccaattcatcctcctaaagcccctatcatcaaggaagtgatttggtctcctccaatcttcaattggataaaggtgaacactgatggtgct 23138950  T
Q  183 gcttcaaaa 191  Q
     ||||||||    
T  23138949 tcttcaaaa 23138941  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 815677 - 815613
Alignment:
Q  48 tcacctgacatgagagagtttaggatcttgaagagcttcagagttccaattcaccctcctaatgc 112  Q
    |||||||| ||||| |||||||| || || ||||| ||||||||||||||  | |||||||||||    
T  815677 tcacctgatatgagggagtttagcattttaaagagtttcagagttccaatcaagcctcctaatgc 815613  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 28688526 - 28688462
Alignment:
Q  48 tcacctgacatgagagagtttaggatcttgaagagcttcagagttccaattcaccctcctaatgc 112  Q
    |||||||| ||||| |||||||| || || ||||| ||||||||||||||  | |||||||||||    
T  28688526 tcacctgatatgagggagtttagcattttaaagagtttcagagttccaatcaagcctcctaatgc 28688462  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38584942 - 38584978
Alignment:
Q  1 aatactgaagagagaaagaggaaggagatgtcccact 37  Q
    ||||||||| |||||||||||||||||||||||||||    
T  38584942 aatactgaaaagagaaagaggaaggagatgtcccact 38584978  T

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Target: scaffold0285 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 178
Target Start/End: Complemental strand, 14916 - 14821
Alignment:
Q  83 cttcagagttccaattcaccctcctaatgctccaaaaatcaaagaagtcatctggtgccctccaatcttccattggataaaagtaaatactgatgg 178  Q
    |||||||||||||||||| |||||||| || ||  |||| || ||||| |||||||  |||||||| ||| ||||||| || || || ||||||||    
T  14916 cttcagagttccaattcatcctcctaaggcacctcaaattaaggaagttatctggtttcctccaattttcaattggattaaggtgaacactgatgg 14821  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 23282120 - 23282041
Alignment:
Q  99 caccctcctaatgctccaaaaatcaaagaagtcatctggtgccctccaatcttccattggataaaagtaaatactgatgg 178  Q
    ||||||||||| |||||||  || |||||||| ||||||  || |||||||||| |||||||||||| ||| ||| ||||    
T  23282120 caccctcctaaggctccaagtattaaagaagttatctggacccatccaatcttcaattggataaaagcaaacactaatgg 23282041  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 23592521 - 23592464
Alignment:
Q  118 aaatcaaagaagtcatctggtgccctccaatcttccattggataaaagtaaatactga 175  Q
    ||||||||||||| || |||| ||||||||||||| ||||||| || || ||||||||    
T  23592521 aaatcaaagaagtgatatggtcccctccaatcttcaattggatcaaggtgaatactga 23592464  T

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