View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9675_low_21 (Length: 319)
Name: NF9675_low_21
Description: NF9675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9675_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 30 - 267
Target Start/End: Complemental strand, 24190651 - 24190414
Alignment:
| Q |
30 |
caatacatattttaggtttcggtacatgagtgaacttctgttattgaaagatattgaaagataaatattacattattttctaggttttcaaactactcta |
129 |
Q |
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| T |
24190651 |
caatacatattttaggtttcggtacacgagtgaacttctgttattgaaagatattaaaagataaatattacattattttctaggttttcgaactactcta |
24190552 |
T |
|
| Q |
130 |
tgtctgcttgtaccatatcctttaggttttagtacacgagtgaccttctgttattgaattattggttcttcatcttcttcttcgtctttttcttcattga |
229 |
Q |
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||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
24190551 |
tgtctgcttgtaccacatcctttaggttttggtacacgagtgaacttctgttattgaattattggttcttcatcttcttggtcctctttttcttcattga |
24190452 |
T |
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| Q |
230 |
agaggtggacaaacaaaagtctacaatgaagatcatct |
267 |
Q |
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|||||| |||| ||||||||||||||| |||||||||| |
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| T |
24190451 |
agaggtagacagacaaaagtctacaataaagatcatct |
24190414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24191567 - 24191531
Alignment:
| Q |
1 |
ttcagtgcagatttgtaccaaattttaagcaatacat |
37 |
Q |
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| T |
24191567 |
ttcagtgcaaatttgttccaaattttaagcaatacat |
24191531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24192664 - 24192628
Alignment:
| Q |
1 |
ttcagtgcagatttgtaccaaattttaagcaatacat |
37 |
Q |
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| T |
24192664 |
ttcagtgcaaatttgttccaaattttaagcaatacat |
24192628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 25908412 - 25908296
Alignment:
| Q |
93 |
aatattacattattttctaggttttcaaactactctatgtctgcttgtaccatatcctttaggttttagtacacgagtgaccttctgttattgaattatt |
192 |
Q |
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|||||||||||||||||||| ||||| ||||||| |||||||| ||||||| ||||||||||| || ||||||||| ||| || ||||| |||| |
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| T |
25908412 |
aatattacattattttctagtttttctaactacttcatgtctgcatgtaccacatcctttaggtattgacacacgagtggactttcgtcgttgaactatt |
25908313 |
T |
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| Q |
193 |
ggttcttcatcttcttc |
209 |
Q |
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||||||||||||||||| |
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| T |
25908312 |
ggttcttcatcttcttc |
25908296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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