View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9675_low_23 (Length: 301)
Name: NF9675_low_23
Description: NF9675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9675_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 28094108 - 28093821
Alignment:
| Q |
1 |
agaataaaagggtcaattaaacattccatgaaaaaattagccacactaacactcttcatgcttaacagaaagcaaaataaaatgttgatagattattaga |
100 |
Q |
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| T |
28094108 |
agaataaaagggtcaattaaacattccatgaaaaaattagccacactaacactcttcatgcttaacagaaagcaaaataaaatgttgatagattattaga |
28094009 |
T |
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| Q |
101 |
catctatcaaaatcctctttatgtaatattgtaatgcaacaataccacattt---aagtttatattttgaatccccttcacatttgctccggttgaatgc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | | || | || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094008 |
catctatcaaaatcctctttatgtaatattgtaatgcaacaaaataaaatgttgatagattatattttgaatccccttcacatttgctccggttgaatgc |
28093909 |
T |
|
| Q |
198 |
gtatctatgatgaaatgtgacaaaagtgctttaaccaaatagacttgatggatgttgggggcagagtctatgaaccattggtgcaaac |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28093908 |
gtatctatgatgaaatgtgacaaaagtgctttaaccaaatagacttgatggatgttgggggcagagtctatgaaccattggtgcaaac |
28093821 |
T |
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