View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9675_low_27 (Length: 281)
Name: NF9675_low_27
Description: NF9675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9675_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 5 - 264
Target Start/End: Complemental strand, 15853115 - 15852856
Alignment:
| Q |
5 |
atgatttacttcatactatagggtatgctgcctgcattttctcacagttgcaatgaaatgataagcaaatggaatggtttattgtcatcagatggaacat |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15853115 |
atgatttacttcatactatagggtatgctgcctgcattttctcacagttgcaatgaaatgataagcaaatggaatggtttattgtcatcagatggaacat |
15853016 |
T |
|
| Q |
105 |
gtgaggttgatgtttggcctttccttcagaatttgacgtgtgatgtaatttctcggacagcatttggaagcagctacgcagaaggaacaaaactatttca |
204 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15853015 |
gtgagattgatgtttggcctttccttcagaatttgacgtgtgatgtaatttctcggacagcatttggaagcagctacgcagaaggaacaaaactatttca |
15852916 |
T |
|
| Q |
205 |
acttttaaagaagcagggagttcttttgatgaaagaactacaaacgaacactccattatg |
264 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15852915 |
acttttgaagaagcagggagttcttttgatgaaagaactacaaacgaacactccattatg |
15852856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 5 - 264
Target Start/End: Complemental strand, 15860476 - 15860217
Alignment:
| Q |
5 |
atgatttacttcatactatagggtatgctgcctgcattttctcacagttgcaatgaaatgataagcaaatggaatggtttattgtcatcagatggaacat |
104 |
Q |
| |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
15860476 |
atgatttacttcaaactataggttatgctgcctgcattttctcacagttgcaatgaaatgataagcaaatggaagggattattgtcatcagatggaacat |
15860377 |
T |
|
| Q |
105 |
gtgaggttgatgtttggcctttccttcagaatttgacgtgtgatgtaatttctcggacagcatttggaagcagctacgcagaaggaacaaaactatttca |
204 |
Q |
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||||| ||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15860376 |
gtgagattgatgtttggccttcccttcagaattttacctgtgatgtaatttctcggacagcatttggaagcagctacgcagaaggaacaaaactatttca |
15860277 |
T |
|
| Q |
205 |
acttttaaagaagcagggagttcttttgatgaaagaactacaaacgaacactccattatg |
264 |
Q |
| |
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|||| |||||||||||||| |||||||||||| || | ||| ||||||| ||||||||| |
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| T |
15860276 |
acttctaaagaagcagggatttcttttgatgacagggcgacacacgaacaatccattatg |
15860217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 5 - 264
Target Start/End: Complemental strand, 15846287 - 15846028
Alignment:
| Q |
5 |
atgatttacttcatactatagggtatgctgcctgcattttctcacagttgcaatgaaatgataagcaaatggaatggtttattgtcatcagatggaacat |
104 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
15846287 |
atgatttactttatactgtagggtatgctgcctgcattttctcacagttgcaatgaaatgataagcaaatggaagggattattgtcatcagatggaacat |
15846188 |
T |
|
| Q |
105 |
gtgaggttgatgtttggcctttccttcagaatttgacgtgtgatgtaatttctcggacagcatttggaagcagctacgcagaaggaacaaaactatttca |
204 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| ||||||||| ||||| ||||||| |
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| T |
15846187 |
gtgagcttgatgtttggcctttccttcagaatttgacctgtgatgtaatttctagaacagcatttggaagcagctatgcagaaggagcaaaaatatttca |
15846088 |
T |
|
| Q |
205 |
acttttaaagaagcagggagttcttttgatgaaagaactacaaacgaacactccattatg |
264 |
Q |
| |
|
|||| |||||||||||||| || ||||||||| || || || ||||||| ||||||||| |
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|
| T |
15846087 |
acttctaaagaagcagggatttattttgatgacagcaccacgcacgaacattccattatg |
15846028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 5 - 264
Target Start/End: Complemental strand, 15866863 - 15866604
Alignment:
| Q |
5 |
atgatttacttcatactatagggtatgctgcctgcattttctcacagttgcaatgaaatgataagcaaatggaatggtttattgtcatcagatggaacat |
104 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||| || |||||||| | ||||||||||||||||||||| |
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|
| T |
15866863 |
atgatttacttcaaactatagggtatgctacctgcattttcttacagttgcaatgaaatgattagtaaatggaaggaactattgtcatcagatggaacat |
15866764 |
T |
|
| Q |
105 |
gtgaggttgatgtttggcctttccttcagaatttgacgtgtgatgtaatttctcggacagcatttggaagcagctacgcagaaggaacaaaactatttca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
15866763 |
gtgaggttgatgtttggcctttccttcagaattttacctgtgatgtaatttctcggacggcatttggaagcagctacgcagaaggagaaaaactatttca |
15866664 |
T |
|
| Q |
205 |
acttttaaagaagcagggagttcttttgatgaaagaactacaaacgaacactccattatg |
264 |
Q |
| |
|
|||| |||||||||||||| |||||||||||| || | ||||||||||| ||||||||| |
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|
| T |
15866663 |
acttctaaagaagcagggatttcttttgatgacagggcgacaaacgaacaatccattatg |
15866604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 208
Target Start/End: Original strand, 30475271 - 30475393
Alignment:
| Q |
86 |
ttgtcatcagatggaacatgtgaggttgatgtttggcctttccttcagaatttgacgtgtgatgtaatttctcggacagcatttggaagcagctacgcag |
185 |
Q |
| |
|
||||||||||||||| ||||||| | |||||||||||||||||||| |||||| || ||||||| |||||| | |||||||||||||| || || | || |
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|
| T |
30475271 |
ttgtcatcagatggatcatgtgaattggatgtttggcctttccttcaaaatttggcgagtgatgttatttctagaacagcatttggaagtagttatgaag |
30475370 |
T |
|
| Q |
186 |
aaggaacaaaactatttcaactt |
208 |
Q |
| |
|
| |||| || | ||||||||||| |
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| T |
30475371 |
agggaaaaagaatatttcaactt |
30475393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 50 - 208
Target Start/End: Original strand, 30482838 - 30482996
Alignment:
| Q |
50 |
agttgcaatgaaatgataagcaaatggaatggtttattgtcatcagatggaacatgtgaggttgatgtttggcctttccttcagaatttgacgtgtgatg |
149 |
Q |
| |
|
||||||||||| ||||| ||||||||| | || | || |||| ||||||| ||||||| ||||||| ||||||| | |||| |||||| | |||||| |
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|
| T |
30482838 |
agttgcaatgatatgattagcaaatgggagggaatgttatcattagatggatcatgtgaaattgatgtatggccttccattcaaaatttggctagtgatg |
30482937 |
T |
|
| Q |
150 |
taatttctcggacagcatttggaagcagctacgcagaaggaacaaaactatttcaactt |
208 |
Q |
| |
|
| ||| |||| |||||||||||||| || || | |||||||| |||| ||||||||||| |
|
|
| T |
30482938 |
ttattgctcgaacagcatttggaagtagttatgaagaaggaataaaaatatttcaactt |
30482996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 30424155 - 30424271
Alignment:
| Q |
92 |
tcagatggaacatgtgaggttgatgtttggcctttccttcagaatttgacgtgtgatgtaatttctcggacagcatttggaagcagctacgcagaaggaa |
191 |
Q |
| |
|
||||||||| ||||||| | || || |||||||||||||| |||||| || ||||||| |||||||| | ||||||||||| || || | ||| |||| |
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| T |
30424155 |
tcagatggatcatgtgaaatggacgtatggcctttccttcaaaatttggcgagtgatgttatttctcgagctgcatttggaagtagttatgaagagggaa |
30424254 |
T |
|
| Q |
192 |
caaaactatttcaactt |
208 |
Q |
| |
|
|| | ||||||||||| |
|
|
| T |
30424255 |
aaagaatatttcaactt |
30424271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 208
Target Start/End: Original strand, 30383977 - 30384099
Alignment:
| Q |
86 |
ttgtcatcagatggaacatgtgaggttgatgtttggcctttccttcagaatttgacgtgtgatgtaatttctcggacagcatttggaagcagctacgcag |
185 |
Q |
| |
|
||||| ||||||||| ||||||| | ||| | ||||||| ||| || |||||| | |||||| |||||||| || ||||||||||| ||||| | || |
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|
| T |
30383977 |
ttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttggcaagtgatgctatttctcgaaccgcatttggaagtagctatgaag |
30384076 |
T |
|
| Q |
186 |
aaggaacaaaactatttcaactt |
208 |
Q |
| |
|
|||||| || | ||||||||||| |
|
|
| T |
30384077 |
aaggaaaaagaatatttcaactt |
30384099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 208
Target Start/End: Original strand, 30394070 - 30394228
Alignment:
| Q |
50 |
agttgcaatgaaatgataagcaaatggaatggtttattgtcatcagatggaacatgtgaggttgatgtttggcctttccttcagaatttgacgtgtgatg |
149 |
Q |
| |
|
||||||||||| ||||| ||||||||| | | | ||||| ||||||||| ||||||| | || || ||||||| ||| ||||||||| | |||||| |
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|
| T |
30394070 |
agttgcaatgatatgattagcaaatgggaggaaatgttgtcttcagatggatcatgtgaaatagacgtatggccttccctgcagaatttggcaagtgatg |
30394169 |
T |
|
| Q |
150 |
taatttctcggacagcatttggaagcagctacgcagaaggaacaaaactatttcaactt |
208 |
Q |
| |
|
|||||||| || || |||||||| || || | |||||||| || | ||||||||||| |
|
|
| T |
30394170 |
ctatttctcgaactgcgtttggaagtagttatgaagaaggaaaaagaatatttcaactt |
30394228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 191
Target Start/End: Complemental strand, 8380199 - 8380094
Alignment:
| Q |
86 |
ttgtcatcagatggaacatgtgaggttgatgtttggcctttccttcagaatttgacgtgtgatgtaatttctcggacagcatttggaagcagctacgcag |
185 |
Q |
| |
|
||||||||||||||| || |||| | || | ||||||| ||| ||||||||||| ||||||| |||||||| | ||||||||||| || |||| || |
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|
| T |
8380199 |
ttgtcatcagatggatcaggtgaaatagacatatggccttccctacagaatttgacaagtgatgttatttctcgaaacgcatttggaagtagttacgaag |
8380100 |
T |
|
| Q |
186 |
aaggaa |
191 |
Q |
| |
|
|||||| |
|
|
| T |
8380099 |
aaggaa |
8380094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 208
Target Start/End: Complemental strand, 41628459 - 41628344
Alignment:
| Q |
93 |
cagatggaacatgtgaggttgatgtttggcctttccttcagaatttgacgtgtgatgtaatttctcggacagcatttggaagcagctacgcagaaggaac |
192 |
Q |
| |
|
|||||||| ||||||| | ||| | ||||||| ||||||||||||| || ||||||| |||||||| ||| |||| ||||| || || | |||||||| |
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| T |
41628459 |
cagatggatcatgtgaaatagatatatggccttcccttcagaatttggcgagtgatgttatttctcgaacaacattcggaagtagttatgaagaaggaag |
41628360 |
T |
|
| Q |
193 |
aaaactatttcaactt |
208 |
Q |
| |
|
|| | ||||||||||| |
|
|
| T |
41628359 |
aagaatatttcaactt |
41628344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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