View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9675_low_3 (Length: 691)
Name: NF9675_low_3
Description: NF9675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9675_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 11 - 442
Target Start/End: Complemental strand, 47385869 - 47385438
Alignment:
| Q |
11 |
cagagacgaagacggccatggcttctatcagcttgaaaacatgaggtacttggtgggacctttgtgacttcaattactaacctaccatcttcacggtggg |
110 |
Q |
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| T |
47385869 |
cagagacgaagacggccatggcttctatcagcttgaaaacatgatgtacttggtgggacctttgtgacttcaattactaacctaccatcttcacggtggg |
47385770 |
T |
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| Q |
111 |
gtctaacacgaagagattctgatcctctcatcgttgtcaaaggtggtggaaaattatggatttttggtttcttagtagctattaatactggactacaagg |
210 |
Q |
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| T |
47385769 |
gtctaacacgaagagattctgatcctctcatcgttgtcaaaggtggtggaaaattatggatttttggtttcttagtagctattaatactggactacaagg |
47385670 |
T |
|
| Q |
211 |
ttctctttgctcctccattgctcccattgaagacaacaacatgtcattttctacaatgtcagtgccactctcattaccaagattctccgtacataattca |
310 |
Q |
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| T |
47385669 |
ttctctttgctcctccattgctcccattgaagacaacaacatgtcattttctacaatgtcagtgccactttcattaccaagattctccgtacataattca |
47385570 |
T |
|
| Q |
311 |
aggctctttggactcatagccaaagatgaacgtttctgttgaggatgcacataggtggttgttgtggtttcttttttccatgtgttttgatatatattat |
410 |
Q |
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| T |
47385569 |
aggctctttggactcatagccaaagaggaacgtttctgttgaggatgcacataggtggttgttgtggtttcttttttccatgtgttttgatatatattat |
47385470 |
T |
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| Q |
411 |
ttgaaagagcatcaaggaaattccaaccacca |
442 |
Q |
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| T |
47385469 |
ttgaaagaccatcaaggaaattccaaccacca |
47385438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 442
Target Start/End: Original strand, 47373064 - 47373491
Alignment:
| Q |
12 |
agagacgaagacggccatggcttctatcagcttgaaaacatgaggtacttggtgggacctttgtgacttcaattactaacctaccatcttcacggtgggg |
111 |
Q |
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| T |
47373064 |
agagacgaagacagccatggcttctatcagcttgaaagcaagaagtacttggtgggaccttagtgacttcaatcaccaaccttccatctccacggtgggt |
47373163 |
T |
|
| Q |
112 |
tctaacacgaagagattctgatcctctcatcgttgtcaaaggtggtggaaaattatggatttttggtttcttagtagctattaatactggactacaaggt |
211 |
Q |
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| T |
47373164 |
tctaacatgaaaagattctgatcctcttatggttgtcaaaggtggtggaaaattctgagttttcactttcttagtagctgctaaaacttgagaacaaggt |
47373263 |
T |
|
| Q |
212 |
tctctttgctcctccattgctcccattgaagacaacaacatgtcattttctacaatgtcagtgccactctcattaccaagattctccgtacataattcaa |
311 |
Q |
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| T |
47373264 |
tgtctttgctcc---attgttcccattgaagacaacaataagtcgttttctacaatgtcagtaccactctcgttgccaagattttctgtgcacaattcaa |
47373360 |
T |
|
| Q |
312 |
ggctctttggactcatagccaaagatgaacgtttctgttgaggatgcacataggtggttgttgtggtttcttttttccatgtgttttgatatatattatt |
411 |
Q |
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| ||||||||||||| | ||||||| |||| ||||| ||||| | | |||||||| |||||||||||||||||| ||||||||||| ||||||||| |
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| T |
47373361 |
gactctttggactcagaaccaaagaggaacacttctgctgagggggaagataggtggctgttgtggtttctttttttgatgtgttttgagctatattatt |
47373460 |
T |
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| Q |
412 |
tgaaagagcatcaaggaaattccaaccacca |
442 |
Q |
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| T |
47373461 |
ggaaagagcgtcaaggaagttccaaccacca |
47373491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 520 - 678
Target Start/End: Complemental strand, 47385360 - 47385202
Alignment:
| Q |
520 |
atcaaagaaacaagttttgaaggctaaatcaatggattgaggagtagggacttgttttggagaaggtaaccttaaccttagtgttcttgactcaacaaga |
619 |
Q |
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| T |
47385360 |
atcaaagaaacaagttttgaaggctaaatcaatggattgaggagtagggacttgttttggagaaggtaaccttaaccttagtgttcttgactcaacaaga |
47385261 |
T |
|
| Q |
620 |
ggagactcaagatgtgtttgcaatccaggatggtatacaactgcagacatgattgatgt |
678 |
Q |
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| T |
47385260 |
ggagactcaagatgtgtttgcaatccaggatggtatacgactgcagacatgattgatgt |
47385202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 520 - 659
Target Start/End: Original strand, 47373566 - 47373705
Alignment:
| Q |
520 |
atcaaagaaacaagttttgaaggctaaatcaatggattgaggagtagggacttgttttggagaaggtaaccttaaccttagtgttcttgactcaacaaga |
619 |
Q |
| |
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|||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||| ||| |
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| T |
47373566 |
atcaaacaaacaagatttgaaggctaaatcaacagattgaggagtagggacttgttttggagaaggtagtcttaaccttactgttcttgattcaacgaga |
47373665 |
T |
|
| Q |
620 |
ggagactcaagatgtgtttgcaatccaggatggtatacaa |
659 |
Q |
| |
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| T |
47373666 |
tgagattcaaggtgtgactgcaatccagggtggtagacaa |
47373705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 20976673 - 20976602
Alignment:
| Q |
34 |
tctatcagcttgaaaacatgaggtacttggtgggacctttgtgacttcaattactaacctaccatcttcacg |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||| | ||||| ||||||||||| |
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| T |
20976673 |
tctatcagcttgaaaacatgaggtacttggtgggaccttttttacttcaattgccaaccttccatcttcacg |
20976602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 527 - 573
Target Start/End: Complemental strand, 20976520 - 20976474
Alignment:
| Q |
527 |
aaacaagttttgaaggctaaatcaatggattgaggagtagggacttg |
573 |
Q |
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| T |
20976520 |
aaacatgttttgaaggctaaatcaatggattgagaagtagggacttg |
20976474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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