View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9675_low_39 (Length: 252)
Name: NF9675_low_39
Description: NF9675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9675_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 53682506 - 53682717
Alignment:
| Q |
17 |
tactgttgacataaaaataattttcacagatgatttatgagtgtttatggaagcacttttgagctttgac----catcttacaattgtgac-caagaaat |
111 |
Q |
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| T |
53682506 |
tactgttgacataaaaataattttcacagatgatttatgagtgtttatagatgcacttttgagctttgacgtatcatcttacaattgtgacacaagaaat |
53682605 |
T |
|
| Q |
112 |
tcaactcatttaaactttcttataaaa-aattgttcatattatttaattttgtttgggtacaaaattgttctgattatttaccactcatggatatgaatc |
210 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53682606 |
tcaactcatttaaactttcttataaaaaaattgttcatattatttaattttgtttgggtacaaaattgttctgattatttaccactcatggatatgaatc |
53682705 |
T |
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| Q |
211 |
ataatatcatat |
222 |
Q |
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|||||||||||| |
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| T |
53682706 |
ataatatcatat |
53682717 |
T |
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