View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9675_low_4 (Length: 661)
Name: NF9675_low_4
Description: NF9675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9675_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 178 - 503
Target Start/End: Original strand, 10298486 - 10298811
Alignment:
| Q |
178 |
actttcacacctatattaaattctttcaaaaaggaaaagcattttgtgcatttcctagagatgagtatttcatttcaatacaaagaannnnnnnattgag |
277 |
Q |
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| T |
10298486 |
actttcacacctatattaaattctttcaaaaaggaaaagcattttgtgcatttcctagagatgagtatttcatttcaatacaaagaatttttttattgag |
10298585 |
T |
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| Q |
278 |
acgggatgataagacagagtcaatatataatacggatctttcatgcagttccatcaatgattcagtagttcgactcttttccatttctagaacagagaca |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
10298586 |
acgggatgataagacagagtcaatatataatacggatctttcatgcagttccatcaatgattcagtagttcgactcttttccatttctagaacagaggca |
10298685 |
T |
|
| Q |
378 |
taaaactttatttaagttttttca--ctctcttctttgcaaagaatacagctaaaaaccataaataagcttccaagacatgctacggctctctgtcttca |
475 |
Q |
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| T |
10298686 |
taaaactttattcaagttttttcactctctcttctttgcaaagaatacagctaaaaaccataaataagcttccaagacatgctacgg--ttctgtcttca |
10298783 |
T |
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| Q |
476 |
ctgaactgtatgaggggagaccggttac |
503 |
Q |
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| T |
10298784 |
ctgaactgtatgaggggagaccggttac |
10298811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 10298087 - 10298251
Alignment:
| Q |
18 |
gtatgaagggaagaatataagctcttagaagctgcgcaagcaaaacttgttgtccataatttaactgcacctattcttggaaatgatcatgatgagtttc |
117 |
Q |
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| T |
10298087 |
gtatgaagggaagaatataagctcttagaagctgcgcaagcaaaacttgttgtccataatttgactgcacctattcttggaaatgatcatgatgagtttc |
10298186 |
T |
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| Q |
118 |
ggagtcgcgaaaatccagtaagaactgaatttagtctaaatttggcattcaatgctcaccacttt |
182 |
Q |
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| T |
10298187 |
ggagtcgcgaaaatccagtaagaactgaatttagtctaaatttggcattcaatgctcactacttt |
10298251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 540 - 649
Target Start/End: Original strand, 10298848 - 10298957
Alignment:
| Q |
540 |
gccaatacatatagtacataaccaccaacaatttctaacaagatggtacatttttgttcttctcattaaacagattttgacgttttactgcgtctaacat |
639 |
Q |
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| T |
10298848 |
gccaatacatatagtacataaccaccaacaatttctaacaagatggtacatttttgttcttctcattaaacagattttgacgttttactgcgtctaacat |
10298947 |
T |
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| Q |
640 |
ggaccaccaa |
649 |
Q |
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| T |
10298948 |
ggaccaccaa |
10298957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 43790036 - 43789923
Alignment:
| Q |
30 |
gaatataagctcttagaagctgcgcaagcaaaacttgttgtccataatttaactgcacctattcttggaaatgatcatgatgagtttcggagtcgcgaaa |
129 |
Q |
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|||||| ||||||||||||||| |||||||| ||||| ||||||| |||| ||||||||| ||||||||||||||||| |||||||||| || || |||| |
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| T |
43790036 |
gaatatgagctcttagaagctgtgcaagcaagacttgctgtccatcatttgactgcacctgttcttggaaatgatcataatgagtttcgcagccgtgaaa |
43789937 |
T |
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| Q |
130 |
atccagtaagaact |
143 |
Q |
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|||||||||||||| |
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| T |
43789936 |
atccagtaagaact |
43789923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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