View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9675_low_47 (Length: 242)

Name: NF9675_low_47
Description: NF9675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9675_low_47
NF9675_low_47
[»] chr6 (10 HSPs)
chr6 (13-236)||(24192717-24192940)
chr6 (13-236)||(24191620-24191843)
chr6 (188-236)||(1072347-1072395)
chr6 (186-237)||(15541630-15541681)
chr6 (188-237)||(15533171-15533220)
chr6 (188-236)||(15530613-15530661)
chr6 (188-236)||(8995255-8995303)
chr6 (188-236)||(9019702-9019750)
chr6 (188-236)||(30729298-30729346)
chr6 (188-236)||(19227900-19227948)
[»] chr5 (16 HSPs)
chr5 (188-236)||(659713-659761)
chr5 (186-234)||(20507955-20508003)
chr5 (188-236)||(21947770-21947818)
chr5 (188-234)||(20504406-20504452)
chr5 (188-227)||(661247-661286)
chr5 (186-236)||(2818798-2818849)
chr5 (188-227)||(12556402-12556441)
chr5 (186-236)||(16775895-16775945)
chr5 (188-234)||(31466450-31466496)
chr5 (185-236)||(2174677-2174728)
chr5 (188-237)||(31179884-31179933)
chr5 (188-234)||(38881845-38881891)
chr5 (190-235)||(6756257-6756302)
chr5 (188-236)||(21684921-21684969)
chr5 (188-236)||(25921944-25921992)
chr5 (188-236)||(34479924-34479972)
[»] chr2 (9 HSPs)
chr2 (188-236)||(40032538-40032586)
chr2 (191-236)||(6259306-6259351)
chr2 (188-236)||(21521186-21521234)
chr2 (188-232)||(18800775-18800819)
chr2 (186-234)||(22407902-22407950)
chr2 (193-236)||(6264615-6264658)
chr2 (187-234)||(42064230-42064277)
chr2 (194-227)||(28462805-28462838)
chr2 (186-230)||(35107016-35107060)
[»] chr3 (16 HSPs)
chr3 (188-235)||(32218836-32218883)
chr3 (187-236)||(48362138-48362187)
chr3 (188-236)||(32264532-32264580)
chr3 (188-237)||(45882659-45882708)
chr3 (188-236)||(26720268-26720316)
chr3 (187-234)||(18162404-18162451)
chr3 (187-232)||(24176998-24177043)
chr3 (188-227)||(10956524-10956563)
chr3 (188-234)||(1321161-1321207)
chr3 (188-234)||(11162891-11162937)
chr3 (188-237)||(25388618-25388667)
chr3 (188-236)||(7606915-7606963)
chr3 (188-236)||(18097374-18097422)
chr3 (188-236)||(18099659-18099707)
chr3 (188-232)||(11170145-11170189)
chr3 (187-234)||(53896708-53896755)
[»] chr4 (14 HSPs)
chr4 (188-236)||(48486113-48486161)
chr4 (188-236)||(36920078-36920125)
chr4 (188-234)||(16631068-16631114)
chr4 (188-221)||(9174651-9174684)
chr4 (188-236)||(36921986-36922033)
chr4 (193-236)||(52942959-52943002)
chr4 (188-234)||(16638549-16638595)
chr4 (188-234)||(22044884-22044930)
chr4 (190-232)||(40091910-40091952)
chr4 (188-236)||(3825064-3825112)
chr4 (188-236)||(7941133-7941181)
chr4 (186-221)||(9177001-9177037)
chr4 (188-216)||(24878796-24878824)
chr4 (189-237)||(47274522-47274570)
[»] chr1 (16 HSPs)
chr1 (188-236)||(14098462-14098510)
chr1 (188-236)||(39462258-39462306)
chr1 (188-234)||(41646681-41646727)
chr1 (188-237)||(13461343-13461392)
chr1 (193-234)||(28207540-28207581)
chr1 (188-236)||(15823286-15823334)
chr1 (190-236)||(38925950-38925996)
chr1 (188-236)||(28840418-28840466)
chr1 (188-236)||(47451405-47451453)
chr1 (188-236)||(49687301-49687349)
chr1 (188-234)||(3580113-3580159)
chr1 (188-236)||(6822775-6822823)
chr1 (188-236)||(13761577-13761625)
chr1 (188-236)||(51752104-51752152)
chr1 (188-224)||(28201911-28201947)
chr1 (188-236)||(28842233-28842281)
[»] chr8 (5 HSPs)
chr8 (188-236)||(12517517-12517565)
chr8 (188-236)||(15072506-15072554)
chr8 (188-234)||(27826782-27826828)
chr8 (188-234)||(27829093-27829139)
chr8 (192-236)||(28252078-28252122)
[»] chr7 (9 HSPs)
chr7 (187-234)||(18567362-18567409)
chr7 (187-234)||(31435540-31435587)
chr7 (186-237)||(42006314-42006365)
chr7 (188-242)||(22392292-22392346)
chr7 (188-234)||(35379-35425)
chr7 (188-234)||(44314-44360)
chr7 (188-234)||(1049767-1049813)
chr7 (188-236)||(40837213-40837261)
chr7 (188-236)||(27306720-27306767)
[»] scaffold0131 (1 HSPs)
scaffold0131 (189-234)||(14768-14814)
[»] scaffold0127 (1 HSPs)
scaffold0127 (186-235)||(13007-13056)
[»] scaffold0068 (1 HSPs)
scaffold0068 (188-236)||(28941-28989)
[»] scaffold0339 (1 HSPs)
scaffold0339 (189-237)||(3747-3795)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 24192940 - 24192717
Alignment:
Q  13 atcaataaagaaagataagaaggaagaaggtcagagtattatcactgtaataaaatttcattccacaatacctaaatcaacaaaggtaagagattttgga 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24192940 atcaataaagaaagataagaaggaagaaggtcagagtattatcactttaataaaatttcattccacaatacctaaatcaacaacggtaagagattttgga 24192841  T
Q  113 atggtgattaatatccatttatggtgtaaactttgaaaagacaatttttgatccgagattaaatatgaaggagagtgtgagagttaacttaaaatcaggt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24192840 atggtgattaatatccatttatggtgtaaactttgaaaagacaatttttgatccgagattaaatatgaaggagagtgtgagagttaacttaaaatcaggt 24192741  T
Q  213 tctgcagaaatcgtgtcacgatgg 236  Q
    | | ||||||||||| ||||||||    
T  24192740 tttacagaaatcgtgccacgatgg 24192717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 24191843 - 24191620
Alignment:
Q  13 atcaataaagaaagataagaaggaagaaggtcagagtattatcactgtaataaaatttcattccacaatacctaaatcaacaaaggtaagagattttgga 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  24191843 atcaataaagaaagataagaaggaagaaggtcagagtattatcactttaataaaatttcattccacaatacctaaatcaacaatagtaagagattttgga 24191744  T
Q  113 atggtgattaatatccatttatggtgtaaactttgaaaagacaatttttgatccgagattaaatatgaaggagagtgtgagagttaacttaaaatcaggt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24191743 atggtgattaatatccatttatggtgtaaactttgaaaagacaatttttgatccgagattaaatatgaaggagagtgtgagagttaacttaaaatcaggt 24191644  T
Q  213 tctgcagaaatcgtgtcacgatgg 236  Q
    | | ||||||||||| ||||||||    
T  24191643 tttacagaaatcgtgccacgatgg 24191620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 1072395 - 1072347
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||    
T  1072395 tgtgagagttaacttaaaatcaggttctgcagaaatcgtggtacgatgg 1072347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 15541681 - 15541630
Alignment:
Q  186 agtgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgga 237  Q
    |||||||||||||||||||||||||| | ||||||||||||| |||||||||    
T  15541681 agtgtgagagttaacttaaaatcaggatttgcagaaatcgtgccacgatgga 15541630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 15533220 - 15533171
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgga 237  Q
    |||||||||||||||||||||||| ||| ||||||||||| |||||||||    
T  15533220 tgtgagagttaacttaaaatcaggatctacagaaatcgtgccacgatgga 15533171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 15530661 - 15530613
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||||    
T  15530661 tgtgagagttaacttaaaatcaggatctgcaggaatcgtggcacgatgg 15530613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 8995255 - 8995303
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||| |||| || ||||||| ||||||||    
T  8995255 tgtgagagttaacttaaaatcaggatctgtaggaatcgtggcacgatgg 8995303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 9019702 - 9019750
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||| |||| || ||||||| ||||||||    
T  9019702 tgtgagagttaacttaaaatcaggatctgtaggaatcgtggcacgatgg 9019750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 30729346 - 30729298
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    ||||||||||||||||| |||||| |||||| |||||||| ||||||||    
T  30729346 tgtgagagttaacttaatatcaggatctgcaaaaatcgtgccacgatgg 30729298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 19227948 - 19227900
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||| | | ||||||| ||||||| ||||||||    
T  19227948 tgtgagagttaacttaaaattaagatctgcaggaatcgtggcacgatgg 19227900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 659713 - 659761
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  659713 tgtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatgg 659761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 20508003 - 20507955
Alignment:
Q  186 agtgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 234  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20508003 agtgtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgat 20507955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 21947770 - 21947818
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21947770 tgtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatgg 21947818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 20504452 - 20504406
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 234  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  20504452 tgtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgat 20504406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 661286 - 661247
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtg 227  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  661286 tgtgagagttaacttaaaatcaggttctgcagaaatcgtg 661247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 2818849 - 2818798
Alignment:
Q  186 agtgtgagagttaa-cttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||| |||||||| ||||||||||||||||||| ||||||||    
T  2818849 agtgtgagagttaaacttaaaattaggttctgcagaaatcgtggcacgatgg 2818798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 12556441 - 12556402
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtg 227  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  12556441 tgtgagagttaatttaaaatcaggttctgcagaaatcgtg 12556402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 16775895 - 16775945
Alignment:
Q  186 agtgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    ||||||||| |||||||||||||||| ||||||| ||||||| ||||||||    
T  16775895 agtgtgagaattaacttaaaatcaggatctgcaggaatcgtggcacgatgg 16775945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 31466496 - 31466450
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 234  Q
    |||||||||||||||||||||||||| ||||| ||||||| ||||||    
T  31466496 tgtgagagttaacttaaaatcaggttttgcaggaatcgtggcacgat 31466450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 2174677 - 2174728
Alignment:
Q  185 gagtgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 236  Q
    ||||||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  2174677 gagtgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatgg 2174728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 31179933 - 31179884
Alignment:
Q  188 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgga 237  Q
    |||||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  31179933 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatgga 31179884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 38881845 - 38881891
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 234  Q
    |||||||||||||||||||||| | ||||||| ||||||| ||||||    
T  38881845 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgat 38881891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 6756257 - 6756302
Alignment:
Q  190 tgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatg 235  Q
    |||| ||||| ||||||||||||||| ||||||||||| |||||||    
T  6756257 tgagggttaatttaaaatcaggttctacagaaatcgtggcacgatg 6756302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 21684969 - 21684921
Alignment:
Q  188 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  21684969 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatgg 21684921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 25921992 - 25921944
Alignment:
Q  188 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  25921992 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatgg 25921944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 34479972 - 34479924
Alignment:
Q  188 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  34479972 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatgg 34479924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 40032586 - 40032538
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40032586 tgtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatgg 40032538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 6259351 - 6259306
Alignment:
Q  191 gagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  6259351 gagagttaacttaaaatcaggttctgcagaaatcgtggcacgatgg 6259306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 21521234 - 21521186
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||||||| ||| ||||||| ||||||||    
T  21521234 tgtgagagttaacttaaaatcaggttctacaggaatcgtggcacgatgg 21521186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 18800819 - 18800775
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacg 232  Q
    |||||||||||||||||||||| |||||| |||||||||| ||||    
T  18800819 tgtgagagttaacttaaaatcatgttctggagaaatcgtggcacg 18800775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 22407950 - 22407902
Alignment:
Q  186 agtgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 234  Q
    |||||||||||||| ||||||| ||||||||||| ||||||| ||||||    
T  22407950 agtgtgagagttaatttaaaattaggttctgcaggaatcgtggcacgat 22407902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 6264658 - 6264615
Alignment:
Q  193 gagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||    
T  6264658 gagttaacttaaaatcaggttctgcagaaattgttgcacgatgg 6264615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 42064230 - 42064277
Alignment:
Q  187 gtgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 234  Q
    ||||||||||||||||||||||| | ||||||| ||||||| ||||||    
T  42064230 gtgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgat 42064277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 28462838 - 28462805
Alignment:
Q  194 agttaacttaaaatcaggttctgcagaaatcgtg 227  Q
    ||||||||||||||||||||||| ||||||||||    
T  28462838 agttaacttaaaatcaggttctggagaaatcgtg 28462805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 35107016 - 35107060
Alignment:
Q  186 agtgtgagagttaacttaaaatcaggttctgcagaaatcgtgtca 230  Q
    |||||||||||||||||||||| ||||| || ||||| |||||||    
T  35107016 agtgtgagagttaacttaaaattaggttatggagaaaacgtgtca 35107060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 32218836 - 32218883
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatg 235  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  32218836 tgtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatg 32218883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 48362187 - 48362138
Alignment:
Q  187 gtgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  48362187 gtgtgagagttaacttaaaatcaggttctgtagaaatcgtggcacgatgg 48362138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 32264580 - 32264532
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  32264580 tgtgagagttaacttaaaatcaggttttgcagaaatcgtggcacgatgg 32264532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 45882659 - 45882708
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgga 237  Q
    |||||||||||||||||||||||| |||||| |||||||| |||||||||    
T  45882659 tgtgagagttaacttaaaatcaggatctgcaaaaatcgtgccacgatgga 45882708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 26720268 - 26720316
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||||    
T  26720268 tgtgagagttaacttaaaatcaggatctgcaggaatcgtggcacgatgg 26720316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 18162404 - 18162451
Alignment:
Q  187 gtgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 234  Q
    ||||||||||||||||||||||||| |||||| |||||||| ||||||    
T  18162404 gtgtgagagttaacttaaaatcaggatctgcataaatcgtgccacgat 18162451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 24176998 - 24177043
Alignment:
Q  187 gtgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacg 232  Q
    ||||||||||||||||||||||| |||||| |||||||||| ||||    
T  24176998 gtgtgagagttaacttaaaatcaagttctggagaaatcgtggcacg 24177043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 10956563 - 10956524
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtg 227  Q
    |||||||||||||||||||||||| ||||||| |||||||    
T  10956563 tgtgagagttaacttaaaatcaggatctgcaggaatcgtg 10956524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 1321161 - 1321207
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 234  Q
    |||||||||||||||||||||| | ||||||| ||||||| ||||||    
T  1321161 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgat 1321207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 11162891 - 11162937
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 234  Q
    |||||||||||||||||||||| | ||||||| ||||||| ||||||    
T  11162891 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgat 11162937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 25388618 - 25388667
Alignment:
Q  188 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgga 237  Q
    |||||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  25388618 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatgga 25388667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 7606963 - 7606915
Alignment:
Q  188 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  7606963 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtgacacgatgg 7606915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 18097422 - 18097374
Alignment:
Q  188 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||| ||||||| |||||||| ||||||||    
T  18097422 tgtgagagttaacttaaaatcaggtttctgca-aaatcgtggcacgatgg 18097374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 18099707 - 18099659
Alignment:
Q  188 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||| ||||||| |||||||| ||||||||    
T  18099707 tgtgagagttaacttaaaatcaggtttctgca-aaatcgtggcacgatgg 18099659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 11170145 - 11170189
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacg 232  Q
    |||||||||||||||||||||| | ||||||| ||||||| ||||    
T  11170145 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacg 11170189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 53896755 - 53896708
Alignment:
Q  187 gtgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgat 234  Q
    ||||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  53896755 gtgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgat 53896708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 48486113 - 48486161
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  48486113 tgtgagagttaacttaaaatcaggtcctgcagaaatcgtggcacgatgg 48486161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 36920125 - 36920078
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  36920125 tgtgagagttaacttaaaatcaggttctgca-aaatcgtggcacgatgg 36920078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 16631068 - 16631114
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 234  Q
    ||||||||||||||||||||||||||||| | |||||||| ||||||    
T  16631068 tgtgagagttaacttaaaatcaggttctggaaaaatcgtgccacgat 16631114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 9174684 - 9174651
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaa 221  Q
    ||||||||||||||||||||||||||||||||||    
T  9174684 tgtgagagttaacttaaaatcaggttctgcagaa 9174651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 36922033 - 36921986
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    ||||||||||||||||||||||||||||||| ||||||||  |||||||    
T  36922033 tgtgagagttaacttaaaatcaggttctgca-aaatcgtggtacgatgg 36921986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 52943002 - 52942959
Alignment:
Q  193 gagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    ||||||||||||||||||||| |||| |||||||| ||||||||    
T  52943002 gagttaacttaaaatcaggttttgcaaaaatcgtggcacgatgg 52942959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 16638549 - 16638595
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 234  Q
    ||||||||||||| ||||||||||||||| | |||||||| ||||||    
T  16638549 tgtgagagttaacataaaatcaggttctggaaaaatcgtgccacgat 16638595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 22044930 - 22044884
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 234  Q
    |||||||||||||||||||||| | ||||||| ||||||| ||||||    
T  22044930 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgat 22044884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 40091952 - 40091910
Alignment:
Q  190 tgagagttaacttaaaatcaggttctgcagaaatcgtgtcacg 232  Q
    |||||||||||||||||||||||||||||  ||||||| ||||    
T  40091952 tgagagttaacttaaaatcaggttctgcaataatcgtggcacg 40091910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 3825112 - 3825064
Alignment:
Q  188 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  3825112 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtgacacgatgg 3825064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 7941133 - 7941181
Alignment:
Q  188 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  7941133 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatgg 7941181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 9177037 - 9177001
Alignment:
Q  186 agtgtgagagttaacttaaaatcagg-ttctgcagaa 221  Q
    |||||||||||||||||||||||||| ||||||||||    
T  9177037 agtgtgagagttaacttaaaatcaggtttctgcagaa 9177001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 24878796 - 24878824
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctg 216  Q
    |||||||||||||||||||||||||||||    
T  24878796 tgtgagagttaacttaaaatcaggttctg 24878824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 47274522 - 47274570
Alignment:
Q  189 gtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgga 237  Q
    ||||||||||||||||||| ||| | || |||||||||| |||||||||    
T  47274522 gtgagagttaacttaaaattaggatatgtagaaatcgtgccacgatgga 47274570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 14098510 - 14098462
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  14098510 tgtgagagttaacttaaaatcagattctgcagaaatcgtggcacgatgg 14098462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 39462258 - 39462306
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  39462258 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgacacaatgg 39462306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 41646681 - 41646727
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 234  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||    
T  41646681 tgtgagagttaacttaaaatcatgttctgcagaaatcgtggcacgat 41646727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 13461392 - 13461343
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgga 237  Q
    |||||||||||||||||||||||| ||||||| ||||||| |||||||||    
T  13461392 tgtgagagttaacttaaaatcaggatctgcaggaatcgtgccacgatgga 13461343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 28207581 - 28207540
Alignment:
Q  193 gagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 234  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  28207581 gagttaacttaaaatcaggttctgcagaaatcgtggcacgat 28207540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 15823286 - 15823334
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||||    
T  15823286 tgtgagagttaacttaaaatcaggatctgcaggaatcgtggcacgatgg 15823334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 38925996 - 38925950
Alignment:
Q  190 tgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    ||||||||||||||||||||||||| ||||||||||||  |||||||    
T  38925996 tgagagttaacttaaaatcaggttccgcagaaatcgtggtacgatgg 38925950  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 28840418 - 28840466
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    ||||| |||||||||||||||||| ||||||| ||||||| ||||||||    
T  28840418 tgtgaaagttaacttaaaatcaggatctgcaggaatcgtggcacgatgg 28840466  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 47451405 - 47451453
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    ||||||||||||||| ||||||| || ||||||||||||| ||||||||    
T  47451405 tgtgagagttaacttcaaatcagattttgcagaaatcgtggcacgatgg 47451453  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 49687301 - 49687349
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||||| || |||||||||| || |||||    
T  49687301 tgtgagagttaacttaaaatcaggttatgtagaaatcgtggcatgatgg 49687349  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 3580159 - 3580113
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 234  Q
    |||| ||||||||||||||||||||| ||||| ||||||| ||||||    
T  3580159 tgtgggagttaacttaaaatcaggttatgcaggaatcgtggcacgat 3580113  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 6822775 - 6822823
Alignment:
Q  188 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  6822775 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatgg 6822823  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 13761577 - 13761625
Alignment:
Q  188 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  13761577 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatgg 13761625  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 51752104 - 51752152
Alignment:
Q  188 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  51752104 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatgg 51752152  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 28201947 - 28201911
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatc 224  Q
    |||||||||||||||||||||| |||||| |||||||    
T  28201947 tgtgagagttaacttaaaatcatgttctgtagaaatc 28201911  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 28842233 - 28842281
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    ||||| |||||||||||||||||| |||| || ||||||| ||||||||    
T  28842233 tgtgaaagttaacttaaaatcaggatctgtaggaatcgtggcacgatgg 28842281  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 12517565 - 12517517
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||||    
T  12517565 tgtgagagttaacttaaaatcaggatctgcaggaatcgtggcacgatgg 12517517  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 15072506 - 15072554
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    ||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  15072506 tgtgagagttaacttaaaatcagattctgcaggaatcgtgacacgatgg 15072554  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 27826782 - 27826828
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 234  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||    
T  27826782 tgtgagagttaacttaaaatcaggatctgcaggaatcgtggcacgat 27826828  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 27829093 - 27829139
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 234  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||    
T  27829093 tgtgagagttaacttaaaatcaggatctgcaggaatcgtggcacgat 27829139  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 28252122 - 28252078
Alignment:
Q  192 agagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||| ||||||| ||||||| ||||||||    
T  28252122 agagttaacttaaaatcaggatctgcaggaatcgtggcacgatgg 28252078  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 18567362 - 18567409
Alignment:
Q  187 gtgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 234  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||||||    
T  18567362 gtgtgagagttgacttaaaatcaggttctacagaaatcgtggcacgat 18567409  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 31435587 - 31435540
Alignment:
Q  187 gtgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 234  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||||||    
T  31435587 gtgtgagagttgacttaaaatcaggttctacagaaatcgtggcacgat 31435540  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 42006314 - 42006365
Alignment:
Q  186 agtgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgga 237  Q
    |||||||||||||||||||||||||||| || ||||||||| ||||| ||||    
T  42006314 agtgtgagagttaacttaaaatcaggttttggagaaatcgtctcacgttgga 42006365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 22392292 - 22392346
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatggaatcgc 242  Q
    |||||||||||| ||||||||||||| || |||||||||| |||||||| |||||    
T  22392292 tgtgagagttaatttaaaatcaggttatggagaaatcgtgccacgatgggatcgc 22392346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 35379 - 35425
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 234  Q
    |||||||||||||||||||||| | ||||||| ||||||| ||||||    
T  35379 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgat 35425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 44314 - 44360
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 234  Q
    |||||||||||||||||||||| | ||||||| ||||||| ||||||    
T  44314 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgat 44360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Complemental strand, 1049813 - 1049767
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgat 234  Q
    |||||||||||||||||||||| | ||||||| ||||||| ||||||    
T  1049813 tgtgagagttaacttaaaatcaagatctgcaggaatcgtggcacgat 1049767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 40837261 - 40837213
Alignment:
Q  188 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  40837261 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatgg 40837213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 27306767 - 27306720
Alignment:
Q  188 tgtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||| ||||| |||| |||||||| ||||||||    
T  27306767 tgtgagagttaacttaaaataaggttttgca-aaatcgtggcacgatgg 27306720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 14768 - 14814
Alignment:
Q  189 gtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgat 234  Q
    ||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  14768 gtgagagttaacttaaaatcaggattctgcaggaatcgtggcacgat 14814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 13056 - 13007
Alignment:
Q  186 agtgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatg 235  Q
    |||||||||||||||||||||||||| |||||||| ||||||| |||||||    
T  13056 agtgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatg 13007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 28941 - 28989
Alignment:
Q  188 tgtgagagttaacttaaaatcagg-ttctgcagaaatcgtgtcacgatgg 236  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  28941 tgtgagagttaacttaaaatcaggtttctgcag-aatcgtggcacgatgg 28989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0339 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 3747 - 3795
Alignment:
Q  189 gtgagagttaacttaaaatcaggttctgcagaaatcgtgtcacgatgga 237  Q
    ||||||||||||||||||| ||| | || |||||||||| |||||||||    
T  3747 gtgagagttaacttaaaattaggatatgtagaaatcgtgccacgatgga 3795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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