View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9675_low_51 (Length: 215)
Name: NF9675_low_51
Description: NF9675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9675_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 21558244 - 21558440
Alignment:
| Q |
1 |
gcagaaaattcaggtgggtttaaccctaatgcttcatagcgtttgatgatgtgtttgatgattacatcaacaacattgattgtgttacttccacatgaac |
100 |
Q |
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| T |
21558244 |
gcagaaaattcaggtgggttgaaccctaatgcttcatagcgtttgatgatgtgtttgatgattacatcaacaacattgattgtgttactcccacatgaac |
21558343 |
T |
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| Q |
101 |
aacccaaatccaccaccacaaatggaatgttagggtcatgaagctcaactttatctagtgcttcttttagaaggtgaagcattgactttgcatgtat |
197 |
Q |
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| T |
21558344 |
aacccaaatccaccaccacaaatggaatgttagggtcatgaagctcaactttatctagtgcttcttttagaaggtgaagcattgactttgcatgtat |
21558440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 20855410 - 20855516
Alignment:
| Q |
4 |
gaaaattcaggtgggtttaaccctaatgcttcatagcgtttgatgatgtgtttgatgattacatcaacaacattgattgtgttacttccacatgaacaac |
103 |
Q |
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| T |
20855410 |
gaaaattcaggtgggttgcaacctaaagcctcataacgcttaatgatgtgatttatgatcacattcaccacattaatggtgttgcttccacatgaacacc |
20855509 |
T |
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| Q |
104 |
ccaaatc |
110 |
Q |
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| T |
20855510 |
ccaaatc |
20855516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 41003070 - 41003176
Alignment:
| Q |
4 |
gaaaattcaggtgggtttaaccctaatgcttcatagcgtttgatgatgtgtttgatgattacatcaacaacattgattgtgttacttccacatgaacaac |
103 |
Q |
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| T |
41003070 |
gaaaattcaggtgggttgcaacctaaagcctcataacgcttattgatgtgatttatgatcacattcaccacattaatggtgttgcttccacatgaacacc |
41003169 |
T |
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| Q |
104 |
ccaaatc |
110 |
Q |
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||||||| |
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| T |
41003170 |
ccaaatc |
41003176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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