View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9675_low_6 (Length: 574)
Name: NF9675_low_6
Description: NF9675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9675_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 16 - 568
Target Start/End: Complemental strand, 28215277 - 28214716
Alignment:
| Q |
16 |
caactactacaccgcattcaccataacataaccaaaagcaacgtcagtggtaggtgatgattggatatcaaccacaaacttgggaaattttgggtcgtcc |
115 |
Q |
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| T |
28215277 |
caactactacaccgcattcaccataacataaccaaaagcaacgtcagtggtaggtgatgattggatttcaaccacaaacttgggaaaatttgggtcgtcc |
28215178 |
T |
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| Q |
116 |
tcaagaaaagctcttcacttttcaactttatgaaattttctaatacatggtgagatttatattttgcatgtaataatgtttaagtgaattgatatgatga |
215 |
Q |
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| T |
28215177 |
tcaagaaaagctcttcacttttcaactttatgaaattttctaatatatg---agatttatattttgcatgtaataatgtttaagtggattgatatgatga |
28215081 |
T |
|
| Q |
216 |
tatcagattagggtcataacagatctaagcttcatagtgtatcgacacatttacttgcaagtcataaaaccaagaggttttgttgttctaacgcttaatg |
315 |
Q |
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| T |
28215080 |
tgtcagattaggatcataacagatctaagcttcatagtgtatcgacacatttacttgcaagtcataaaaccaagaggttttgttgttctaacgcttaatg |
28214981 |
T |
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| Q |
316 |
acaataaaagttttttgttttgaaagaaataaaagttaaactcatatgtttgtgaaatata---------tctttatcaactagaccaacatatattgcc |
406 |
Q |
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| T |
28214980 |
acaataaaagttttttgttttgaaagaaataaaagttaaactcatatgtttgtgaaatatataaatcatctctttatcaactagaccaacatatattgcc |
28214881 |
T |
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| Q |
407 |
tatgatattttaactgtgttaattcctctttgggagatagtttcatgaa-nnnnnnnnnnnnnnnnnnnnatcaagagatagtttcattatttcatagac |
505 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28214880 |
tatgatatattaactgtgttaattcctctttgggagatagtttcatgaacttttttctattttattttttatcaagagatagtttcattatttcatagac |
28214781 |
T |
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| Q |
506 |
tattctcatacttgtctcaccaaaggcatatgat--tatatatattgttctacaacaacaccaaa |
568 |
Q |
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| T |
28214780 |
tattctcatacttgtctcaccaaaggcatatgattatatatatattgttctacaacaacaccaaa |
28214716 |
T |
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