View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9675_low_7 (Length: 504)
Name: NF9675_low_7
Description: NF9675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9675_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 177 - 495
Target Start/End: Complemental strand, 29283197 - 29282875
Alignment:
| Q |
177 |
gaagacagaacgatatatcattaatcaactcattatcatcatatgatgattccatttagacacattttttcctctccatattccaccaacaaaactcnnn |
276 |
Q |
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| T |
29283197 |
gaagacagaacgatatatcattaatcaactcattatcatcacatgatgattccatttagacacattttttcctctccatattccaccaacaaaactccaa |
29283098 |
T |
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| Q |
277 |
nnnnttatcatattgttctctctattattcatatgatga----ctttatgaaatgctgcatgcattagggttttcatcactgaatagttgaggtggtgga |
372 |
Q |
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| T |
29283097 |
aaaaatttcatattgttctctctattattcatatgatgatggactttatgaaatgatgcatgcattaggattttcatcactgaatagttgaggtggtgga |
29282998 |
T |
|
| Q |
373 |
gtacgttcaatcacataaagtggaggatattgataataatacatcattctcttcattccttcttcatcaatattaaccatagcagtagcaccactctctt |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29282997 |
gtacgttcaatcacataaagtggaggatattgataataatacatcattctcttcattccttcttcatcaatattaaccatagcagtagcaccactctctt |
29282898 |
T |
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| Q |
473 |
ctttcttggtttcttctctgctt |
495 |
Q |
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| T |
29282897 |
ctttcttggtttcttctttgctt |
29282875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 29283364 - 29283293
Alignment:
| Q |
21 |
attactgcagcgaatccaaatccatgaaaagcaacttgaggatactcatatttcacaagcatttatacaaca |
92 |
Q |
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| T |
29283364 |
attaccgcagcaaatccagatccatgaaatgcaacttgaggatactcatatttcacaagcatttgtacaaca |
29283293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 135
Target Start/End: Complemental strand, 29283270 - 29283236
Alignment:
| Q |
101 |
atggtgcatttgtacaacattgatctatgactagt |
135 |
Q |
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| T |
29283270 |
atggtgcatttgtacaacattgatctatgactagt |
29283236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 5e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 179 - 421
Target Start/End: Original strand, 6469698 - 6469938
Alignment:
| Q |
179 |
agacagaacgatatatcattaatcaactcattatcatcatatgatgattccatttagacacattttttcctctccatattccaccaacaaaactcnnnnn |
278 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| |||||||| |||||| ||||||||| ||||||||| | |
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| T |
6469698 |
agacagaacgatatatcattgatcaacttattatcatcatgtgatgattccatttaggcacattttctcctctacatattccatcaacaaaacacaaaaa |
6469797 |
T |
|
| Q |
279 |
nnttatcatattgttctctctattattcatatgatgactttatgaaatgctgcatgcattagggttttcatcactgaatagttgaggtggtggagtacgt |
378 |
Q |
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| T |
6469798 |
a--tatcatattgttctctctgttattcatatgatgactttatgaaatgctgcatgcattaggattttcatcactgaatagttgaggaggtggagtacgt |
6469895 |
T |
|
| Q |
379 |
tcaatcacataaagtggaggatattgataataatacatcattc |
421 |
Q |
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| T |
6469896 |
tcaatcacataaagtggaggatattgataataatacatcattc |
6469938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 6469146 - 6469264
Alignment:
| Q |
21 |
attactgcagcgaatccaaatccatgaaaagcaacttgaggatactcatatttcacaagcatttatacaaca----nnnnnnnnatggtgcatttgtaca |
116 |
Q |
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||||||||||| || |||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
6469146 |
attactgcagcaaaaccaaatgcatgaaacgcaacttgaggatactcatatttcacaagcatttgtacaacaatttttttttttatggtgcatttgtaca |
6469245 |
T |
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| Q |
117 |
acattgatctatgactagt |
135 |
Q |
| |
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||||||||||||||||||| |
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| T |
6469246 |
acattgatctatgactagt |
6469264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 42524657 - 42524711
Alignment:
| Q |
317 |
tttatgaaatgctgcatgcattagggttttcatcactgaatagttgaggtggtgg |
371 |
Q |
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|||||||||||| |||||||| || ||||||||||| || |||||||||||||| |
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| T |
42524657 |
tttatgaaatgcaacatgcattgggattttcatcactaaagagttgaggtggtgg |
42524711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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