View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9675_low_9 (Length: 472)
Name: NF9675_low_9
Description: NF9675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9675_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 25304092 - 25303651
Alignment:
| Q |
1 |
atcgtttgaatacaaatcatttagaagaatatacggagaagtgtgctcggcttgttattcaggaggaggccttttggaaacaaagagctaagatgcactg |
100 |
Q |
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| T |
25304092 |
atcgtgtgaatacaaatcatttagaagaaaatatggagaagtgtgctcggcttgttattcaggaggaggccttttggaaacaaagagctaagatgcactg |
25303993 |
T |
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| Q |
101 |
gttgaaacaaagggacgtgaatacaaggttcttttacatgtccactgtttcgagaggtaaagtcaagaaagttataaaactggtgtctgataatggttat |
200 |
Q |
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| T |
25303992 |
gttgaaacaaagggacgtgaatagaaggttcttttacatgtccactgtttctagaggtaaagtcaagaaagttacaaaactggtgtttgataatggttat |
25303893 |
T |
|
| Q |
201 |
ttggttatgagataggagcacctatgtgatgtagcaaagaattattttgatgtggtttttgcggccaacaatggtaaccatacgcatgttcttgattttc |
300 |
Q |
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| T |
25303892 |
ttggttatgagataggagcacctatgtgatgtagcaaataattattttgatgtggtttttgcagccaacaatggtaaccatacgcatgttcttgattttc |
25303793 |
T |
|
| Q |
301 |
taaagtgtgtgggttacccacgaatacaatgatatgcttatgacactgattactagaaaagagcgcaaacatgccctatttcaaatgcaacctgataagt |
400 |
Q |
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| T |
25303792 |
taaagtgtgtgggttacccacgaatacaatgatatgcttatgacactgattactagaaaagagctcaaacatgccctatttcaaatgcaacctgataagt |
25303693 |
T |
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| Q |
401 |
ccccaaggtctgatggatttaatcttgtgttctatcattatt |
442 |
Q |
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| T |
25303692 |
cctcgaggtctgatggatttaatcctgcgttctatcattatt |
25303651 |
T |
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Back To:
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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 7124477 - 7124523
Alignment:
| Q |
60 |
caggaggaggccttttggaaacaaagagctaagatgcactggttgaa |
106 |
Q |
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| T |
7124477 |
caggaggaggcgttttggaagcaaagagcaaaaatgcactggttgaa |
7124523 |
T |
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