View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9676_low_1 (Length: 392)
Name: NF9676_low_1
Description: NF9676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9676_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 110 - 379
Target Start/End: Complemental strand, 47707694 - 47707397
Alignment:
| Q |
110 |
aagtgaactaaatagagcagctgatagtagagattcctcggtgaatttcttcggcacaaccatgccgcaaacacagacattcttgttcaatgtttcatgt |
209 |
Q |
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| T |
47707694 |
aagtgaactaaatagagcagctgatagtagagattcctcggtgaatttcttcggcacaaccacgccgcaaacacagacattcttgttcaatgtttcatgt |
47707595 |
T |
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| Q |
210 |
gtcacacagactgatatataatcaaaaggagtaattaattc--------------------gtctcttgaggttataaagtcaaattctaaccaattttt |
289 |
Q |
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| T |
47707594 |
gtcacacagactgatacataatcaaaaggagtaattaattcgtcttagagattataaattcgtctcttgaggttataaagtcaaattctaaccaattttt |
47707495 |
T |
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| Q |
290 |
taatttaacaaatgcag-------nnnnnnnnnctattcttagattatgaaaatgtaaaagaactaaact-acttaatttaccttcttctatacatct |
379 |
Q |
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| T |
47707494 |
taatttaacaaatgcagaaaagaaaaaaaaaaactattcttagattatgaaaatgcaaaagaactaaactaacttaatttaccttcttctatacatct |
47707397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 47707839 - 47707746
Alignment:
| Q |
19 |
tttttgcaagttctctcacacaatcaaataacaacctctttgtcttgtgcaacacccttttagatttcatcacatgagaaacatcatgcccaag |
112 |
Q |
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| T |
47707839 |
tttttgtaagttctctcacacaatcaaataacaacctctttgtcttgtgcaacacccttttagatttcatcacatgagaaacatcatgcccaag |
47707746 |
T |
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