View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9676_low_10 (Length: 265)

Name: NF9676_low_10
Description: NF9676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9676_low_10
NF9676_low_10
[»] chr1 (5 HSPs)
chr1 (19-244)||(7999945-8000174)
chr1 (19-106)||(51515180-51515267)
chr1 (19-148)||(7908406-7908526)
chr1 (167-242)||(51515034-51515109)
chr1 (167-215)||(7908541-7908589)
[»] chr4 (2 HSPs)
chr4 (167-240)||(1304386-1304459)
chr4 (19-89)||(1304217-1304287)


Alignment Details
Target: chr1 (Bit Score: 151; Significance: 6e-80; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 8000174 - 7999945
Alignment:
Q  19 cagtggacttcccaattccatttgtcccaaccaaaccaagcacttgccccggtctgggaaccggcaacctacaattacaattacaattcttcgattggat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8000174 cagtggacttcccaattccatttgtcccaaccaaaccaagcacttgccccggtctgggaaccggcaacctgcaattacaattacaattcttcgattggat 8000075  T
Q  119 taaaaagcttaaaaacataaaaacataagt----nnnnnnnnnnnnnnnnnnctgtgaagcttaaaggtattaggaccatatctatgagtggtatctttg 214  Q
    ||||||||||||||||||||||||||||||                      ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8000074 taaaaagcttaaaaacataaaaacataagtcacaacacacacacacacacacctgtgaagcttaaaggtattaggaccatatctatgagtggtatctttg 7999975  T
Q  215 tccaaattctttggcaagttgataatttcg 244  Q
    |||||||| |||||||||||||||||||||    
T  7999974 tccaaattttttggcaagttgataatttcg 7999945  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 51515267 - 51515180
Alignment:
Q  19 cagtggacttcccaattccatttgtcccaaccaaaccaagcacttgccccggtctgggaaccggcaacctacaattacaattacaatt 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||    
T  51515267 cagtcgacttcccaattccatttgtcccaaccaaaccaagcacttgccccggcctgggaaccggcaacctgcaattacaattataatt 51515180  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 7908406 - 7908526
Alignment:
Q  19 cagtggacttcccaattccatttgtcccaaccaaaccaagcacttgccccggtctgggaaccggcaacctacaattacaattacaattcttcgattggat 118  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||      | |||||||||||||| |||||||     
T  7908406 cagtggacttcccaattccatttgtcccgaccaaaccaagcacttgccccggcatgggaaccggcaacc------tgcaattacaattcttggattggaa 7908499  T
Q  119 taaaaagcttaaaaacataaaaacataagt 148  Q
    ||||||||   |||||||||||||||||||    
T  7908500 taaaaagc---aaaacataaaaacataagt 7908526  T

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Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 51515109 - 51515034
Alignment:
Q  167 ctgtgaagcttaaaggtattaggaccatatctatgagtggtatctttgtccaaattctttggcaagttgataattt 242  Q
    ||||| |||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51515109 ctgtgtagcttaaaagtattaggaccgtatctatgagtggtatctttgtccaaatcctttggcaagttgataattt 51515034  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 7908541 - 7908589
Alignment:
Q  167 ctgtgaagcttaaaggtattaggaccatatctatgagtggtatctttgt 215  Q
    ||| ||||| ||||||||||||||||||||||||||||| |||||||||    
T  7908541 ctgcgaagcataaaggtattaggaccatatctatgagtgatatctttgt 7908589  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 1304386 - 1304459
Alignment:
Q  167 ctgtgaagcttaaaggtattaggaccatatctatgagtggtatctttgtccaaattctttggcaagttgataat 240  Q
    ||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||||  ||||||||||||||    
T  1304386 ctgtgtagcttaaaagtattaggaccatatctatgagttgtttctttgtccaaattctccggcaagttgataat 1304459  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 1304217 - 1304287
Alignment:
Q  19 cagtggacttcccaattccatttgtcccaaccaaaccaagcacttgccccggtctgggaaccggcaaccta 89  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| |||||| || |||| ||||||||||    
T  1304217 cagtggacttcccaattccatttttccctaccaaaccaagcactttccccggcctcggaatcggcaaccta 1304287  T

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