View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9676_low_17 (Length: 231)
Name: NF9676_low_17
Description: NF9676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9676_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 4483640 - 4483429
Alignment:
| Q |
1 |
cattaacattgtaactcaagctttcaacagaatgaccagtaggaacaatagcagcccaaaaattttactaagcgaaatacagtctagcaatttcattggt |
100 |
Q |
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| T |
4483640 |
cattaacattgtaactcaagctttcaacagaatgaccagtaggaacaatagcagcccaaaatttttactaagcgaaatacagtctagcaatttcattggt |
4483541 |
T |
|
| Q |
101 |
taaagtgaccatattcaacttgaagctagacaagtcatgcagaagaatcttgtcctaaggatagttaatgtggctgggaaaagttacaaggaattatgtt |
200 |
Q |
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| T |
4483540 |
ttaagtggccatattcaacttgaagctggacaagtcatgcagaagaatcttgtcctaaggatagttaatgtggctgggaaaagttacaaggaattatgtt |
4483441 |
T |
|
| Q |
201 |
tttggaccgaac |
212 |
Q |
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|||||||||||| |
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| T |
4483440 |
tttggaccgaac |
4483429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 4488608 - 4488402
Alignment:
| Q |
1 |
cattaacattgtaactcaagctttcaacagaatgaccagtaggaacaatagcagcccaaaaattttactaagcgaaatacagtctagcaatttcattggt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | ||||||||| ||||||| ||| |||||||| ||||| |
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| T |
4488608 |
cattaacattgtaactcaagctttgaacagaatgaccagtaggaagaatagcagcccaaagactttactaagagaaatactttcttgcaatttccttggt |
4488509 |
T |
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| Q |
101 |
taaagtgaccatattcaacttgaagctagacaagtcatgcagaagaatcttgtcctaaggatagttaatgtggctgggaaaagttacaaggaattatgtt |
200 |
Q |
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| ||||| |||||||||||||||| || | ||| |||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||| | |
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| T |
4488508 |
ttaagtggccatattcaacttgaatctggccaactcatgcagaagaatcttgtcttaaggatagtaaatgtggctgggaagagttacaaggaattatgct |
4488409 |
T |
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| Q |
201 |
tttggac |
207 |
Q |
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||||||| |
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| T |
4488408 |
tttggac |
4488402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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