View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9676_low_5 (Length: 334)
Name: NF9676_low_5
Description: NF9676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9676_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 315
Target Start/End: Original strand, 43117166 - 43117471
Alignment:
| Q |
10 |
gcagagagagatgaaactgacccagatcgtgatgatactcataagggttcctcatcatctttttcatagctatattgtattcttccatcaaatcattaga |
109 |
Q |
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| T |
43117166 |
gcagagagagatgaaactgacccagatcgtgatgatactcataagggttcctcatcatctttttcatagctatattgtattcttccatcaaatcattaga |
43117265 |
T |
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| Q |
110 |
tttagatacctttttgctggtaggattctcttcaatcccactttctgatagtgtacagcaaattttgttcatcctaatagagtagttgagaggaatcata |
209 |
Q |
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| T |
43117266 |
tttagatacccttttgctggtaggattctcttcaatcccactttctgatagtgtacagcaaattttgttcatcctaatagagtagttgagaggaatcata |
43117365 |
T |
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| Q |
210 |
aaactgcatggcgatttttgtttcctctgctttgaaagtagttttgtgtccaaagaagttctcaatgttgaagagaaaccaatgttacttacactttcca |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43117366 |
aaactgcatggcgatttttgtttcctctgctttgaaagtagttttgtgtacaaagaagttctcaatgttgaagagaaaccaatgttacttacactttcca |
43117465 |
T |
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| Q |
310 |
ttgttc |
315 |
Q |
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|||||| |
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| T |
43117466 |
ttgttc |
43117471 |
T |
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