View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9676_low_8 (Length: 287)
Name: NF9676_low_8
Description: NF9676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9676_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 33397508 - 33397776
Alignment:
| Q |
1 |
actgatatccaattgttggaggaaagggaaggaatcggcaatgaaggatatgtcagtatggtatagagagccgatgttggaacaagtgagagaggttaag |
100 |
Q |
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| T |
33397508 |
actgatatccaattgttggaggaaagggaaggaatcggcaatgaaggatatgtcagtatggtatagagagccgatgttggaacaagtgagagaggtcaag |
33397607 |
T |
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| Q |
101 |
gttgatttagtgtttttgagaatagtttgcaaccctgacgtggggaaagtggggtggtttgagaggttgagagatgtgagacgggagagggaaacagaac |
200 |
Q |
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| T |
33397608 |
gttgatttagtgtttttgagaatagtttgcaatcctaacgtggggaaagtggggtggtttgagaggttgagagatgtgagacgggagagggaaacagaac |
33397707 |
T |
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| Q |
201 |
gggggattcgagagagaagaatgtttgtgtcaccgcggaagcacgagaggtcaagtgaagtaagatttg |
269 |
Q |
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| T |
33397708 |
gggggattcgagagagaagaatgtttgtgtcaccgcggaagcacgagaggtcaagtgaagtaagatttg |
33397776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 36876594 - 36876698
Alignment:
| Q |
1 |
actgatatccaattgttggaggaaagggaaggaatcggcaatgaaggatatgtcagtatggtatagagagccgatgttggaacaagtgagagaggttaag |
100 |
Q |
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| T |
36876594 |
actgatatccagttgttggaggaaaggaaaagaatgagcaatgaaggatatgtcagtatggtatagagagccaatgttggaacatgtgagagaggtcaag |
36876693 |
T |
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| Q |
101 |
gttga |
105 |
Q |
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||||| |
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| T |
36876694 |
gttga |
36876698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 27004856 - 27004670
Alignment:
| Q |
1 |
actgatatccaattgttggaggaaagggaaggaatcggcaatgaaggatatgtcagtatggtatagagagccgatgttggaacaagtgagagaggttaag |
100 |
Q |
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|||||||||||||||||||||||| ||||| ||||| || || |||||||||| ||| ||| ||||||| | || |||||||| ||||||||||| ||| |
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| T |
27004856 |
actgatatccaattgttggaggaaggggaatgaatctgcgatcaaggatatgtgagtgtggcatagagaagccatattggaacatgtgagagaggtcaag |
27004757 |
T |
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| Q |
101 |
gttgatt------tagtgtttttgagaatagtttgcaaccctgacgtggggaaagtggggtggtttgagaggttgagagatgtgaga |
181 |
Q |
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| T |
27004756 |
gtggatttagtagtagtctttttgagaagagtttgcaaccctaagacggggaaggtggtgtggttggagaggttgagggatgtgaga |
27004670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 33708024 - 33707921
Alignment:
| Q |
77 |
ttggaacaagtgagagaggttaaggttgatttagtgtttttgagaatagtttgcaaccctgacgtggggaaagtggggtggtttgagaggttgagagatg |
176 |
Q |
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||||||||| |||| ||||| |||||||||||| | |||||||||| | | |||||||| || |||||| ||||||||||| ||||||||||| || | |
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| T |
33708024 |
ttggaacaaatgagggaggtcaaggttgatttattatttttgagaagaactcgcaaccctaactcggggaaggtggggtggttggagaggttgagggaag |
33707925 |
T |
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| Q |
177 |
tgag |
180 |
Q |
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|||| |
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| T |
33707924 |
tgag |
33707921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 37579803 - 37579734
Alignment:
| Q |
110 |
gtgtttttgagaatagtttgcaaccctgacgtggggaaagtggggtggtttgagaggttgagagatgtga |
179 |
Q |
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| T |
37579803 |
gtgtttttgagaatagtctgcaaccctaatacggggaaggtggggtggttggagaggttgagagaagtga |
37579734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 269
Target Start/End: Complemental strand, 33713837 - 33713675
Alignment:
| Q |
98 |
aaggttgatttagtgtttttgagaatagtttgcaaccctgacgtggggaaagtggggtggtttgagaggttgagagatgtgagacgggagagggaaacag |
197 |
Q |
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|||||||||||| | |||||||||| || | |||||||| || ||||| ||||||||||| ||||||||||| || || |||||||||| |
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| T |
33713837 |
aaggttgatttattatttttgagaagagctcgcaaccctaactcagggaaggtggggtggttggagaggttgagggaagt---------gagggaaacaa |
33713747 |
T |
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| Q |
198 |
aacgggggattcgagagagaagaatgtttgtgtcaccgcggaagcacgagaggtcaagtgaagtaagatttg |
269 |
Q |
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|| | ||||||||||||||||| ||||| |||||||| |||||| || ||||| || || || ||||||| |
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| T |
33713746 |
aatgagggattcgagagagaagtgtgtttaggtcaccgcagaagcatgaaaggtcgagggaggtgagatttg |
33713675 |
T |
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