View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9677_high_12 (Length: 238)
Name: NF9677_high_12
Description: NF9677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9677_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 12418902 - 12418688
Alignment:
| Q |
9 |
ataagccttggcgttactgttcaatttttcaccaataccaactaaggttccaacacataccattacaagtatcataatggagaatcatagttttttatcg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12418902 |
ataagccttggcgttactgttcaatttttcaccaataccaactaaggttccaacacataccattacaagtatcataatggagaatcatagttttttatcg |
12418803 |
T |
|
| Q |
109 |
agtgaattttgggaacctttggattttctgcataattatgaagaaatatttgtgtgaacaagttcgttattagcttaggcacacggggagtttatagaat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12418802 |
agtgaattttgggaacctttggattttctgcataattatgaagaaatatttgtgtgaacaagttcgttattagcttaggcacacggggagtttatagaat |
12418703 |
T |
|
| Q |
209 |
tttgaaggaagcaaa |
223 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
12418702 |
tttgaaggaagcaaa |
12418688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 12654794 - 12654848
Alignment:
| Q |
163 |
tgaacaagttcgttattagcttaggcacacggggagtttatagaattttgaagga |
217 |
Q |
| |
|
|||||||||| |||||||||||||| ||| || |||||||||||| |||||||| |
|
|
| T |
12654794 |
tgaacaagtttgttattagcttaggtacatggagagtttatagaacattgaagga |
12654848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 15329118 - 15329046
Alignment:
| Q |
133 |
tttctgcataattatgaagaaatatttgtgtgaacaagttcgttattagcttaggcacacggggagtttatagaa |
207 |
Q |
| |
|
|||||||||||||||| ||||| || |||||| |||||| ||||||||||||| |||| || |||||||||||| |
|
|
| T |
15329118 |
tttctgcataattatgtagaaaaat--gtgtgatcaagtttgttattagcttagtcacatggagagtttatagaa |
15329046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University