View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9677_high_19 (Length: 225)
Name: NF9677_high_19
Description: NF9677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9677_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 9854426 - 9854216
Alignment:
| Q |
1 |
ctaagcgagttaactgtttctcaatctcatccatcaacaaatgacagattccttgtcgtcgatattgttccttggtggccacgaaaactacctctgcaac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9854426 |
ctaagcgagttaactgtttctcaatctcatccatcaacaaatgacagattccttgtcgtcgatattgttccttggtggccacgaaaactacctctgcaac |
9854327 |
T |
|
| Q |
101 |
cttttgaccataaatccttacagttgccactgaaatcacttcacccattttctccaaaattacattatagaaacctcgaaagttgaagcgattgtgttct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||| |
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| T |
9854326 |
cttttgaccataaatccttacagttgccactgaaatcacttcacccattttctccaaaattacattatagaaaccacaaaagtttaagcgattgtgttct |
9854227 |
T |
|
| Q |
201 |
gattctctgct |
211 |
Q |
| |
|
||||||||||| |
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|
| T |
9854226 |
gattctctgct |
9854216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 9819554 - 9819764
Alignment:
| Q |
1 |
ctaagcgagttaactgtttctcaatctcatccatcaacaaatgacagattccttgtcgtcgatattgttccttggtggccacgaaaactacctctgcaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9819554 |
ctaagcgagttaactgtttctcaatctcatccatcaacaaatgacacattccttgtcgtcgatattgttccttggtggccacgaaaactacctctgcaac |
9819653 |
T |
|
| Q |
101 |
cttttgaccataaatccttacagttgccactgaaatcacttcacccattttctccaaaattacattatagaaacctcgaaagttgaagcgattgtgttct |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||| |
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| T |
9819654 |
cttttgaccataaatccttacagttgccactgaaatcacttcacccattttctccaaaattacattatagaaaccacaaaagtttaagcgattgtgttct |
9819753 |
T |
|
| Q |
201 |
gattctctgct |
211 |
Q |
| |
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||||||||||| |
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| T |
9819754 |
gattctctgct |
9819764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 44870401 - 44870608
Alignment:
| Q |
1 |
ctaagcgagttaactgtttctcaatctcatccatcaacaaatgacagattccttgtcgtcgatattgttccttggtggccacgaaaactacctctgcaac |
100 |
Q |
| |
|
|||||||||| ||||||| ||||| |||||||||||||||| |||| |||||| ||| ||||| ||| |||||||| ||||| ||||||| ||||||||| |
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| T |
44870401 |
ctaagcgagtcaactgttcctcaagctcatccatcaacaaacgacacattcctcgtcctcgatgttgctccttggtagccacaaaaactatctctgcaac |
44870500 |
T |
|
| Q |
101 |
cttttgaccataaatccttacagttgccactgaaatcacttcacccattttctccaaaattacattatagaaacctcgaaagttgaagcgattgtgttct |
200 |
Q |
| |
|
|||||||||| ||||||||| ||||||||| ||||||||||| ||||||||||||||||| ||| |||||||||| || ||||| ||||| || |||||| |
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| T |
44870501 |
cttttgaccaaaaatccttatagttgccaccgaaatcacttcccccattttctccaaaatcacagtatagaaaccacggaagttcaagcgtttatgttct |
44870600 |
T |
|
| Q |
201 |
gattctct |
208 |
Q |
| |
|
|| ||||| |
|
|
| T |
44870601 |
gaatctct |
44870608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 47529397 - 47529208
Alignment:
| Q |
1 |
ctaagcgagttaactgtttctcaatctcatccatcaacaaatgacagattccttgtcgtcgatattgttccttggtggccacgaaaactacctctgcaac |
100 |
Q |
| |
|
|||||||||| || |||||||||| ||||||||||||||| |||| |||||||||| ||||| || || ||||||||||| |||||||| ||| ||||| |
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|
| T |
47529397 |
ctaagcgagtcaattgtttctcaagttcatccatcaacaaacgacacattccttgtcctcgatgttctttcttggtggccaagaaaactatctcagcaac |
47529298 |
T |
|
| Q |
101 |
cttttgaccataaatccttacagttgccactgaaatcacttcacccattttctccaaaattacattatagaaacctcgaaagttgaagcg |
190 |
Q |
| |
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||| |||||||||||||||| ||| ||||| ||||||||||| |||||||||||||||| |||||||||||||| | |||||| ||||| |
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| T |
47529297 |
cttgtgaccataaatccttatagtagccaccgaaatcacttcctccattttctccaaaatcacattatagaaaccacaaaagttcaagcg |
47529208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 47524025 - 47523852
Alignment:
| Q |
1 |
ctaagcgagttaactgtttctcaatctcatccatcaacaaatgacagattccttgtcgtcgatattgttccttggtggccacgaaaactacctctgcaac |
100 |
Q |
| |
|
||||||| || ||||||| ||||| ||| | |||||||||| |||| |||||||||| |||||||||||||||||| || || ||||||| ||||||||| |
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| T |
47524025 |
ctaagcgtgtcaactgttcctcaagctcgtgcatcaacaaacgacacattccttgtcttcgatattgttccttggtagctacaaaaactatctctgcaac |
47523926 |
T |
|
| Q |
101 |
cttttgaccataaatccttacagttgccactgaaatcacttcacccattttctccaaaattacattatagaaac |
174 |
Q |
| |
|
|||||||||||||||||||| |||||| || ||||| |||| |||||||||||| ||||| ||||||||||||| |
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|
| T |
47523925 |
cttttgaccataaatccttatagttgcaaccgaaatgactttacccattttctctaaaatcacattatagaaac |
47523852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 32 - 184
Target Start/End: Complemental strand, 47551043 - 47550891
Alignment:
| Q |
32 |
catcaacaaatgacagattccttgtcgtcgatattgttccttggtggccacgaaaactacctctgcaaccttttgaccataaatccttacagttgccact |
131 |
Q |
| |
|
|||||||||| ||| |||||||||| |||||||| || |||||||||| |||||| | ||| |||||||||||||||||||||||||| |||||||| |
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| T |
47551043 |
catcaacaaacaacacattccttgtcttcgatatttttttttggtggccatgaaaacaatctcagcaaccttttgaccataaatccttacggttgccaca |
47550944 |
T |
|
| Q |
132 |
gaaatcacttcacccattttctccaaaattacattatagaaacctcgaaagtt |
184 |
Q |
| |
|
|| |||||| |||| |||||| | ||| ||| |||||||||| |||||||| |
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|
| T |
47550943 |
taactcactttaccccctttctctataatcacagtatagaaaccacgaaagtt |
47550891 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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