View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9677_high_5 (Length: 403)
Name: NF9677_high_5
Description: NF9677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9677_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 19 - 387
Target Start/End: Original strand, 41469524 - 41469901
Alignment:
| Q |
19 |
aaagtaaattgttatatatataattgatattggtattccgtttcattgatttagaggcgaaacattctggtttttattattatatatatccttttggtgt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41469524 |
aaagtaaattgttatatatataattgatattggtattccgtttcattgatttagaggcgaaacattctggtttttattattatatatatcctttcggtgt |
41469623 |
T |
|
| Q |
119 |
agcttacattctgttgcattttttaatgannnnnnnnnn---------gtagtttatgtgatttcttacttttttatatttcatggtagctaaatctgtt |
209 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41469624 |
agcttacattctgttgcattttttaatgatttttttttttttttttttgtagtttatgtgatttcttacttttttatatttcatggtagttaaatctgtt |
41469723 |
T |
|
| Q |
210 |
tcccattgttcccttagaaatcagcaagatacagcaggttgaacgcgattatctggagagcatgtcgaaggattatgaaaaagccattcttcaactagaa |
309 |
Q |
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|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41469724 |
tcacattgttcccttagaaatcagcaaggtacagcaggttgaacgcgattatctggagagcatgtcgaaggattatgaaaaagccattcttcaactagaa |
41469823 |
T |
|
| Q |
310 |
gctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcgagagaaataag |
387 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41469824 |
gctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcgagagaaataag |
41469901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 39 - 369
Target Start/End: Original strand, 41476568 - 41476895
Alignment:
| Q |
39 |
taattgatattggtattccgtttcattgatttagaggcgaaacattctggtttttattattatatatatccttttggtgtagctta-cattctgttgcat |
137 |
Q |
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||||| |||||||||||| ||||||| ||||||||| | |||||||||||||||||||| ||||| | || | | ||| ||||||| ||||||| ||||| |
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| T |
41476568 |
taattaatattggtattctgtttcatggatttagagccaaaacattctggtttttattaatatatctttcttctcggtatagcttaacattctgctgcat |
41476667 |
T |
|
| Q |
138 |
tttttaatgannnnnnnnnngtagtttatgtgatttcttacttttttatatttcatggtagctaaatctgtttcccattgttcccttagaaatcagcaag |
237 |
Q |
| |
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||| ||||| ||||| || |||||| ||| ||||| |||||| |||||||| | |||||||| ||||||||| ||||||||||||||| |
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| T |
41476668 |
tttggaatgatttgtt----gtagtcgatttgattttttaatttttgatattttgtggtagctgagtctgtttcacattgttccattagaaatcagcaag |
41476763 |
T |
|
| Q |
238 |
atacagcaggttgaacgcgattatctggagagcatgtcgaaggattatgaaaaagccattcttcaactagaagctcggaggaatgagcttatgtcacgtg |
337 |
Q |
| |
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|| | |||||||||||| || |||| ||||| | ||||||||| |||||| ||| | | |||| ||| ||||||||||||| |||| ||| |||| |
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| T |
41476764 |
atgcggcaggttgaacgtgagtatcaggagaaagtatcgaaggatcatgaaatagctaggcaggaactggaaactcggaggaatgaacttaagtcccgtg |
41476863 |
T |
|
| Q |
338 |
aaaaggatctgcagaagggtcaagaagataat |
369 |
Q |
| |
|
||||||||||||||||| |||||| ||||||| |
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|
| T |
41476864 |
aaaaggatctgcagaagcgtcaagcagataat |
41476895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 39 - 369
Target Start/End: Original strand, 41483622 - 41483938
Alignment:
| Q |
39 |
taattgatattggtattccgtttcattgatttagaggcgaaacattctggtttttattattatatatatccttttggtgtagcttacattctgttgcatt |
138 |
Q |
| |
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||||| |||||||| ||| ||||| |||||||||||| |||||||||||||||||| || |||||||||| ||||||||||||||||| |||||| |||| |
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| T |
41483622 |
taattaatattggtgttctgtttctttgatttagaggtgaaacattctggtttttactactatatatatcattttggtgtagcttacagtctgttacatt |
41483721 |
T |
|
| Q |
139 |
ttttaatgannnnnnnnnngtagtttatgtgatttcttacttttttatatttcatggtagctaaatctgtttcccattgttcccttagaaatcagcaaga |
238 |
Q |
| |
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|| ||||| |||||| || |||| ||||| |||||||||||||||| | ||||||| ||||| | ||||| |||||||||| |
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| T |
41483722 |
ttggaatga-------tttgtagttgatttgat-------tttttaatatttcatggtagcttagtctgttttattttgtttcattagagatcagcaaga |
41483807 |
T |
|
| Q |
239 |
tacagcaggttgaacgcgattatctggagagcatgtcgaaggattatgaaaaagccattcttcaactagaagctcggaggaatgagcttatgtcacgtga |
338 |
Q |
| |
|
| | |||||||||||| || || | ||||| | || |||||| |||||||||||| || |||| |||||||||||||| |||||||| || ||||| |
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| T |
41483808 |
tgcggcaggttgaacgagagtaccaggagaaagtatctaaggatcatgaaaaagccaggctggaactggaagctcggaggaacgagcttatttcccgtga |
41483907 |
T |
|
| Q |
339 |
aaaggatctgcagaagggtcaagaagataat |
369 |
Q |
| |
|
||||||||||||||| || ||| ||||||| |
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| T |
41483908 |
gaaggatctgcagaagcgtgaagtagataat |
41483938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 185 - 382
Target Start/End: Original strand, 40750960 - 40751157
Alignment:
| Q |
185 |
atatttcatggtagctaaatctgtttcccattgttcccttagaaatcagcaagatacagcaggttgaacgcgattatctggagagcatgtcgaaggatta |
284 |
Q |
| |
|
|||||||||||||||| | |||||||| |||||| | ||||||||||||||||| | |||||||||| |||| |||| ||||| | || |||||| | |
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| T |
40750960 |
atatttcatggtagctgagtctgtttcatattgtttcattagaaatcagcaagatgcggcaggttgaatgcgagtatcaggagaaagtatctaaggatca |
40751059 |
T |
|
| Q |
285 |
tgaaaaagccattcttcaactagaagctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcgagagaa |
382 |
Q |
| |
|
||||||| ||| || |||| ||||||||||||||||| |||||||| ||||| |||||||| |||||| |||||| ||||||| ||| ||||||| |
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| T |
40751060 |
tgaaaaatccaggctggaactggaagctcggaggaatgaacttatgtcccgtgagaaggatctacagaagcgtcaagcagataatcacaatgagagaa |
40751157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 140
Target Start/End: Original strand, 40750828 - 40750929
Alignment:
| Q |
39 |
taattgatattggtattccgtttcattgatttagaggcgaaacattctggtttttattattatatatatccttttggtgtagcttacattctgttgcatt |
138 |
Q |
| |
|
||||| |||| |||||||||| |||| |||||||||| |||||| | | ||||||| || || | |||| ||||||||||||||||||||| ||||||| |
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| T |
40750828 |
taattaatatcggtattccgtctcatcgatttagaggtgaaacactatcgtttttactactacacctatcattttggtgtagcttacattctattgcatt |
40750927 |
T |
|
| Q |
139 |
tt |
140 |
Q |
| |
|
|| |
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|
| T |
40750928 |
tt |
40750929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 179 - 387
Target Start/End: Complemental strand, 16413508 - 16413300
Alignment:
| Q |
179 |
ttttttatatttcatggtagctaaatctgtttcccattgttcccttagaaatcagcaagatacagcaggttgaacgcgattatctggagagcatgtcgaa |
278 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| | ||||||||||||||||||||| |||||||| |||| |
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|
| T |
16413508 |
ttttttatatttcatggtagctaagtctgtttcacattgttccgttagaaatcagcaagatgcggcaggttgaacgcgattatcttgagagcataacgaa |
16413409 |
T |
|
| Q |
279 |
ggattatgaaaaagccattcttcaactagaagctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcgag |
378 |
Q |
| |
|
|||| | ||||||||||| || |||| ||||| | ||||||||| ||||||| ||| |||||||||||||||||| | |||||||||||| |||| | | |
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| T |
16413408 |
ggatcaagaaaaagccatactggaactggaagcgctgaggaatgaacttatgttacgagaaaaggatctgcagaagcgacaagaagataatcacattgtg |
16413309 |
T |
|
| Q |
379 |
agaaataag |
387 |
Q |
| |
|
||||||||| |
|
|
| T |
16413308 |
agaaataag |
16413300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 185 - 387
Target Start/End: Complemental strand, 16409078 - 16408876
Alignment:
| Q |
185 |
atatttcatggtagctaaatctgtttcccattgttcccttagaaatcagcaagatacagcaggttgaacgcgattatctggagagcatgtcgaaggatta |
284 |
Q |
| |
|
||||||||||||| || |||||||| |||||||| ||||||||||||||||| | ||||||||||||||| |||| ||||| || || |||||| | |
|
|
| T |
16409078 |
atatttcatggtaactgtgtctgtttcatattgttccattagaaatcagcaagatgcggcaggttgaacgcgagtatcaggagaaaatatccaaggatca |
16408979 |
T |
|
| Q |
285 |
tgaaaaagccattcttcaactagaagctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcgagagaaat |
384 |
Q |
| |
|
||||||||||| || ||||||||||| ||| |||||||||||||| ||||||||||||||||||||| |||||| ||||||| ||| ||||||||| |
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|
| T |
16408978 |
tgaaaaagccaggctggaactagaagcttggaaaaatgagcttatgtcccgtgaaaaggatctgcagaagcgtcaagcagataatcacaatgagagaaat |
16408879 |
T |
|
| Q |
385 |
aag |
387 |
Q |
| |
|
||| |
|
|
| T |
16408878 |
aag |
16408876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 193 - 387
Target Start/End: Original strand, 52471849 - 52472043
Alignment:
| Q |
193 |
tggtagctaaatctgtttcccattgttcccttagaaatcagcaagatacagcaggttgaacgcgattatctggagagcatgtcgaaggattatgaaaaag |
292 |
Q |
| |
|
|||||||| | | |||||| ||||||||| ||||||||||||||||| | ||| ||||||||| | |||||||| | ||||| |||||| ||||||||| |
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|
| T |
52471849 |
tggtagcttagtttgtttcacattgttccattagaaatcagcaagatgcggcaagttgaacgcaactatctggaaaatatgtctaaggatcatgaaaaag |
52471948 |
T |
|
| Q |
293 |
ccattcttcaactagaagctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcgagagaaataag |
387 |
Q |
| |
|
|||| | |||| |||||| |||||||||| |||||||| ||||||| ||||||||||||| |||||| ||||||| ||| ||||| |||||| |
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|
| T |
52471949 |
ccatgttggaactggaagctaggaggaatgaacttatgtcccgtgaaatggatctgcagaagcgtcaagtagataatgacaatgagagcaataag |
52472043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 16409183 - 16409115
Alignment:
| Q |
45 |
atattggtattccgtttcattgatttagaggcgaaacattctggtttttattattatatatatcctttt |
113 |
Q |
| |
|
||||| |||||| ||||| |||||||||||| |||||||||| ||||||||| |||||| ||||||||| |
|
|
| T |
16409183 |
atatttgtattctgtttctttgatttagaggtgaaacattcttgtttttattgttatatgtatcctttt |
16409115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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