View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9677_high_7 (Length: 349)
Name: NF9677_high_7
Description: NF9677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9677_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 329
Target Start/End: Original strand, 26374106 - 26374427
Alignment:
| Q |
8 |
ttggtgttctgcagtggagcggttctttaataagaagggggctaaaaagaccgacaataatctacatcttgagacaaataaaatgcctcagcagataaaa |
107 |
Q |
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| T |
26374106 |
ttggtgttctgcagtggagctgttctttaataagaagggggctaaaaagaccggcaataatctacatcttgagacaaataaaatgcctcagcagataaaa |
26374205 |
T |
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| Q |
108 |
aagacaaagataaagatgaaaacttatgagaatattaaagatgaggttaagactaagactgctccttctgatatcttgcgttgtaaagttgaagatagag |
207 |
Q |
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| T |
26374206 |
aagacaaagataaagatgaaaacttatgagaatattaaagatgaggttaagactaagactgctccttctgatatcttgcgttgtaaagttgaagataaag |
26374305 |
T |
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| Q |
208 |
atgaattgagaacttctgagaatgtctcactaaagataaagatgagaacttatgggaatttaaaagatgaagttaaagacgagattaagactaagagtaa |
307 |
Q |
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| T |
26374306 |
atgaattgagaacttctgaaaatgtctcgctaaagataaagatgacaacttctgggaatttaaaagatgaagttaaagatgaggttaagactaagagtaa |
26374405 |
T |
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| Q |
308 |
gactgctccttctgatatcatg |
329 |
Q |
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| T |
26374406 |
gactgctccttctgatatcatg |
26374427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 26374397 - 26374483
Alignment:
| Q |
155 |
taagactaagactgctccttctgatatcttgcgttgtaaagttgaa------gatagagatgaattgagaacttctgagaatgtctc |
235 |
Q |
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| T |
26374397 |
taagagtaagactgctccttctgatatcatgcgttggaatggtgaaaataaagataaagatgaattgagaacttctgagaatgtctc |
26374483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 117 - 287
Target Start/End: Complemental strand, 40767391 - 40767215
Alignment:
| Q |
117 |
ataaagatgaaaacttatgagaatattaaagat------gaggttaagactaagactgctccttctgatatcttgcgttgtaaagttgaagatagagatg |
210 |
Q |
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| T |
40767391 |
ataaagatgagaacttatgagaatattaaagataaaaacgaggttaagactaaaactgctccgtctgacatcttgcgttggaaagttgaagataaagatg |
40767292 |
T |
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| Q |
211 |
aattgagaacttctgagaatgtctcactaaagataaagatgagaacttatgggaatttaaaagatgaagttaaagac |
287 |
Q |
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| T |
40767291 |
aattgataacttctgagaatgtctaaccaaagataaagatgagaacttatagtaattttaaagatgtagttaaagac |
40767215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 40767475 - 40767423
Alignment:
| Q |
8 |
ttggtgttctgcagtggagcggttctttaataagaagggggctaaaaagaccg |
60 |
Q |
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| T |
40767475 |
ttggtgttcagcagtggatcggttctctaatatgaagggggataaaaagaccg |
40767423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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