View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9677_low_1 (Length: 668)
Name: NF9677_low_1
Description: NF9677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9677_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 288 - 643
Target Start/End: Original strand, 21368723 - 21369080
Alignment:
| Q |
288 |
tgcaaaattcttaagagctaacggaattacttattttaaagtacgcgaacaaacattagagatacttgggaaatttgactaatttctactccagctctgt |
387 |
Q |
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| T |
21368723 |
tgcaaaattcttaagagctaatggaattacttatctgaaagtacgcgaacaaacattagagatacttgggaaatcttactggtc-ctactccagccctgt |
21368821 |
T |
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| Q |
388 |
ggtaccttctttgactaaaccacttcagaaagccctcgattgggcacttaataagaaattaaagtcaggtatggatgatttaggtgatgacatatctgtg |
487 |
Q |
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| T |
21368822 |
ggtactgtctttgactgaaccacttcataaagccctcgattgggcacttaatgagacatcaaagtcaggtatggatgatttaggtgatgacatatctatg |
21368921 |
T |
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| Q |
488 |
tattgagaagtagctccctgccattttcccaattgatctgttagattcattgttccgttggt-gtagagctccattttcaaattttgtgctaccgtgttg |
586 |
Q |
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| T |
21368922 |
tattcagaagtagccccctgccattttcccaattgatctgctagattcattgttctgctggtggtagggctccattttcaaattttgtgccattgtgttc |
21369021 |
T |
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| Q |
587 |
atgttttaattaatcagaaacgatattttg--acacaaatttcaacaacagtttggatg |
643 |
Q |
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| T |
21369022 |
atgttttaattaatcagaaacgatattttgacacacaaatttcaacaacagtttggatg |
21369080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 21442358 - 21442283
Alignment:
| Q |
111 |
atgtaatttcactttgcattcgtcacacgatttgtgttttttaaagtaggaggtaggtctcccttgtgtgatcatt |
186 |
Q |
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| T |
21442358 |
atgtaatttcactttgcatttgtcacacgatttgtgttttttaaagtaggaggtaggcctcccttgtgtgatcatt |
21442283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 42650597 - 42650659
Alignment:
| Q |
68 |
agtttttgcttgaatctttagtgtatatgtagtaatgaatgaaa--tgtaatttcactttgcat |
129 |
Q |
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| T |
42650597 |
agtttttgcttgaatctctaattt-tgtgtagtaatgaatgaaaaatgtaatttcactttgcat |
42650659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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