View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9677_low_17 (Length: 310)

Name: NF9677_low_17
Description: NF9677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9677_low_17
NF9677_low_17
[»] chr6 (2 HSPs)
chr6 (1-292)||(931215-931506)
chr6 (1-292)||(10607785-10608077)
[»] chr4 (8 HSPs)
chr4 (1-292)||(12589669-12589960)
chr4 (1-292)||(46764543-46764834)
chr4 (1-292)||(25655106-25655396)
chr4 (1-165)||(11680763-11680926)
chr4 (1-165)||(11689042-11689205)
chr4 (200-292)||(11680567-11680659)
chr4 (200-292)||(11688846-11688938)
chr4 (200-288)||(52758423-52758511)
[»] chr5 (2 HSPs)
chr5 (38-152)||(4371130-4371243)
chr5 (38-110)||(4363327-4363402)
[»] chr1 (1 HSPs)
chr1 (200-287)||(49611273-49611360)
[»] chr3 (3 HSPs)
chr3 (200-288)||(38741510-38741598)
chr3 (200-288)||(46739905-46739993)
chr3 (200-255)||(46721331-46721386)
[»] scaffold0180 (1 HSPs)
scaffold0180 (200-288)||(22763-22851)
[»] chr7 (2 HSPs)
chr7 (200-288)||(29314836-29314924)
chr7 (215-288)||(41224563-41224636)
[»] chr8 (1 HSPs)
chr8 (215-288)||(41092427-41092500)


Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 931506 - 931215
Alignment:
Q  1 tttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttctttccaattgccgcagctgatgcttccaaagatctcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  931506 tttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttctttccaattgccgcagctgatgcttccaaagatctcat 931407  T
Q  101 atactgtttgaaaaatgagttattttggttaattagtagctagatattttgtattaagataaaaataatgatgaaaaagattaacagtcatatgttttgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  931406 atactgtttgaaaaatgagttattttggttaattagtagctagatattttgtattaagataaaaataatgatgaaaaagattaacagtcatatgttttgg 931307  T
Q  201 atagagaaattaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgatataga 292  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  931306 atagagaaactaggaaaccaaaaggttatgaattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgatataga 931215  T

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Target: chr6; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 10607785 - 10608077
Alignment:
Q  1 tttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttctttccaattgccgcagctgatgcttccaaagatctcat 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10607785 tttgttcatttgtattccatgttccatgttccttcatggatccacttgttccccactctttcttcccaattgccgcagctgatgcttccaaagatctcat 10607884  T
Q  101 atactgtttgaaaaatgagttattttggttaattagtagctagatattttgtattaagataaaaataatgatgaaaaagattaacagtcatatgttttgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  10607885 atactgtttgaaaaatgagttattttggttaattagtagctagatgttttgtattaagatgaaaataatgatgaaaaagattaacagtcatatgttctgg 10607984  T
Q  201 atagagaaattaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattc-ttttaatattgatataga 292  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  10607985 atagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaaggtaaaagatgattctttttaatattgatataga 10608077  T

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Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 12589669 - 12589960
Alignment:
Q  1 tttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttctttccaattgccgcagctgatgcttccaaagatctcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  12589669 tttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttcttcccaattgccgcaactgatgcttccaaagatctcat 12589768  T
Q  101 atactgtttgaaaaatgagttattttggttaattagtagctagatattttgtattaagataaaaataatgatgaaaaagattaacagtcatatgttttgg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  12589769 atactgtttgaaaaatgagttattttggttaattagtagctagatattttgtattaagatgaaaataatgatgaaaaagattaacagtcatatgttctgg 12589868  T
Q  201 atagagaaattaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgatataga 292  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12589869 atagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgatataga 12589960  T

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Target: chr4; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 46764834 - 46764543
Alignment:
Q  1 tttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttctttccaattgccgcagctgatgcttccaaagatctcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  46764834 tttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttcttcccaattgccgcaactgatgcttccaaagatctcat 46764735  T
Q  101 atactgtttgaaaaatgagttattttggttaattagtagctagatattttgtattaagataaaaataatgatgaaaaagattaacagtcatatgttttgg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  46764734 atactgtttgaaaaatgagttattttggttaattagtagctagatattttgtattaagatgaaaataatgatgaaaaagattaacagtcatatgttatgg 46764635  T
Q  201 atagagaaattaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgatataga 292  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  46764634 atagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaaaataaaagataattcttttaatattgatataga 46764543  T

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Target: chr4; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 25655106 - 25655396
Alignment:
Q  1 tttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttctttccaattgccgcagctgatgcttccaaagatctcat 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  25655106 tttgttcatttgtattccatgttcca-gttccttcatgggtccacttgttccccactctttcttcccaattgccgcaactgatgcttccaaagatctcat 25655204  T
Q  101 atactgtttgaaaaatgagttattttggttaattagtagctagatattttgtattaagataaaaataatgatgaaaaagattaacagtcatatgttttgg 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  25655205 atactgtttgaaaaatgagttattttggttaattaatagctagctattttgtattaagatgaaaataatgatgaaaaagattaacagtcatatgttctgg 25655304  T
Q  201 atagagaaattaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgatataga 292  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25655305 atagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaaaataaaagatgattcttttaatattgatataga 25655396  T

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Target: chr4; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 11680926 - 11680763
Alignment:
Q  1 tttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttctttccaattgccgcagctgatgcttccaaagatctcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11680926 tttgttcatttgtattccatgttccatgttccttcatgggtctacttgttccccactctttcttcccaattgccgcagctgatgcttccaaagatctcat 11680827  T
Q  101 atactgtttgaaaaatgagttattttggttaattagtagctagatattttgtattaagataaaaa 165  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11680826 atactg-ttgaaaaatgagttattttggttaattagtagctagatattttgtattaagatgaaaa 11680763  T

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Target: chr4; HSP #5
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 11689205 - 11689042
Alignment:
Q  1 tttgttcatttgtattccatgttccatgttccttcatgggtccacttgttccccactctttctttccaattgccgcagctgatgcttccaaagatctcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11689205 tttgttcatttgtattccatgttccatgttccttcatgggtctacttgttccccactctttcttcccaattgccgcagctgatgcttccaaagatctcat 11689106  T
Q  101 atactgtttgaaaaatgagttattttggttaattagtagctagatattttgtattaagataaaaa 165  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11689105 atactg-ttgaaaaatgagttattttggttaattagtagctagatattttgtattaagatgaaaa 11689042  T

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Target: chr4; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 200 - 292
Target Start/End: Complemental strand, 11680659 - 11680567
Alignment:
Q  200 gatagagaaattaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgatataga 292  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  11680659 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagattattcttttaacattgatataga 11680567  T

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Target: chr4; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 200 - 292
Target Start/End: Complemental strand, 11688938 - 11688846
Alignment:
Q  200 gatagagaaattaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgatataga 292  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  11688938 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagattattcttttaacattgatataga 11688846  T

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Target: chr4; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 52758423 - 52758511
Alignment:
Q  200 gatagagaaattaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgata 288  Q
    |||||||| ||||| ||||||| || |||||||||||||||||||||||||||||| | | | ||||||||||||||||||||||||||    
T  52758423 gatagagagattagaaaaccaatagattatggattttgtgagtataaggatgaagaattaaacaaaagatgattcttttaatattgata 52758511  T

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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 152
Target Start/End: Original strand, 4371130 - 4371243
Alignment:
Q  38 gggtccacttgttccccactctttctttccaattgccgcagctgatgcttcca---aagatctcatatactgtttgaaaaatgagttattttggttaatt 134  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||   |||||||||||||||||||||||||||||| |||||||    ||    
T  4371130 gggtccacctgttccccactctttcttcccaattgccgcagctgatgcttccaaagaagatctcatatactgtttgaaaaatgagtcattttgg----tt 4371225  T
Q  135 agtagctagatattttgt 152  Q
    ||||||||||||||||||    
T  4371226 agtagctagatattttgt 4371243  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 4363327 - 4363402
Alignment:
Q  38 gggtccacttgttccccactctttctttccaattgccgcagctgatgcttcca---aagatctcatatactgtttg 110  Q
    ||||||||||||||||||||||||||| ||||||||  | |||| ||||||||   | ||||||||||||||||||    
T  4363327 gggtccacttgttccccactctttcttcccaattgctcctgctgttgcttccaaggatgatctcatatactgtttg 4363402  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 200 - 287
Target Start/End: Original strand, 49611273 - 49611360
Alignment:
Q  200 gatagagaaattaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgat 287  Q
    |||||||| ||||| |||||||||||||||| |||||||||||||||||||||||| | | | ||||||||| |||||||||||||||    
T  49611273 gatagagatattagaaaaccaaaaggttatgaattttgtgagtataaggatgaagaattaaacaaaagatgaatcttttaatattgat 49611360  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 288
Target Start/End: Complemental strand, 38741598 - 38741510
Alignment:
Q  200 gatagagaaattaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgata 288  Q
    |||||||| ||||| ||| |||||||||||| ||||||||||||||| |||||||| | | ||||||||||||| ||||||||||||||    
T  38741598 gatagagagattagaaaatcaaaaggttatgaattttgtgagtataaagatgaagaattaaataaaagatgattattttaatattgata 38741510  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 200 - 288
Target Start/End: Complemental strand, 46739993 - 46739905
Alignment:
Q  200 gatagagaaattaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgata 288  Q
    |||||||||| | ||||||||||| ||||||||||||||||||||||||||||||| | | | |||| ||||| ||||| |||||||||    
T  46739993 gatagagaaacttggaaaccaaaatgttatggattttgtgagtataaggatgaagaattaaagaaaatatgatgcttttgatattgata 46739905  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 46721386 - 46721331
Alignment:
Q  200 gatagagaaattaggaaaccaaaaggttatggattttgtgagtataaggatgaaga 255  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  46721386 gatagagagattagaaaaccaaaaggttatggattttgtgagtataaggatgaaga 46721331  T

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Target: scaffold0180 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 22763 - 22851
Alignment:
Q  200 gatagagaaattaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgata 288  Q
    |||||||||| | ||||||||||| ||||||||||||||||||||||||||||||| | | | |||| ||||| ||||| |||||||||    
T  22763 gatagagaaacttggaaaccaaaatgttatggattttgtgagtataaggatgaagaattaaagaaaatatgatgcttttgatattgata 22851  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 288
Target Start/End: Complemental strand, 29314924 - 29314836
Alignment:
Q  200 gatagagaaattaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgata 288  Q
    |||||| ||| ||| |||||||||||| |||||||||||||||||||||||||||| |   | ||||||| |||||||| |||||||||    
T  29314924 gatagaaaaactagaaaaccaaaaggtcatggattttgtgagtataaggatgaagaattgaagaaaagattattcttttgatattgata 29314836  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 41224563 - 41224636
Alignment:
Q  215 aaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgata 288  Q
    |||||||||||| |||||||||||||||||||||||||||| |   | ||||||| |||||||| |||||||||    
T  41224563 aaaccaaaaggtcatggattttgtgagtataaggatgaagaattgaagaaaagattattcttttgatattgata 41224636  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 41092500 - 41092427
Alignment:
Q  215 aaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgata 288  Q
    |||||||||||| |||||||||||||||||||||||||||| |   | ||||||| |||||||| |||||||||    
T  41092500 aaaccaaaaggtcatggattttgtgagtataaggatgaagaattgaagaaaagattattcttttgatattgata 41092427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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