View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9677_low_2 (Length: 474)
Name: NF9677_low_2
Description: NF9677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9677_low_2 |
 | |
|
| [»] scaffold0365 (1 HSPs) |
| | |
|
| [»] scaffold0400 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0365 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 10 - 459
Target Start/End: Original strand, 2492 - 2941
Alignment:
| Q |
10 |
gcaaaggagaaggggatatttaataaggatgaaagttggaggaagaaattgcaaggtcttgttcctgctgatgggataaaagtgaagcatattcgtacag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2492 |
gcaaaggagaaggggatatttaataaggatgaaagttggaggaagaaattgcaaggtcttgttcctgctgatgggataaaagtgaagcatattcgtacag |
2591 |
T |
|
| Q |
110 |
gtgaagatgtgaagctttcgaggagggttgtcgcggtttttgttatgatgactatggctgatttttgtgatcagctttttggttttcaagatatgttgtt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2592 |
gtgaagatgtgaagctttcgaggagggttgtcgcggtttttgttatgatgactatggctgatttttgtgatcagctttttggttttcaagatatgttgtt |
2691 |
T |
|
| Q |
210 |
tgagaactttgatggtaggcttgagtttaaagggaacaattttggtgctgtttggcccggaaatggtaagccgggtttgtggttgaattctatttcgagg |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2692 |
tgagaactttgatggtaggcttgagtttaaagggaacaattttggtgctgtttggccgggaaatggtaagccgggtttgtggttgaattctatttcgagg |
2791 |
T |
|
| Q |
310 |
atgggagctgtttacaatttgattctgagagaggaagagatattcttggaagaaaagaagaaaatgttgggagtaaaaggagttaatggtgttgattctg |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2792 |
atgggagctgtttacaatttgattctgagagaggaagagatattcttggaagaaaagaagaaaatgttgggagtaaaaggagttaatggtgttgattatg |
2891 |
T |
|
| Q |
410 |
agagagatgaacatattgagttggttttgccaccggttttcgctaaatgt |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2892 |
agagagatgaacatattgagttggttttgccaccggttttcgctaaatgt |
2941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 127 - 459
Target Start/End: Original strand, 1965 - 2297
Alignment:
| Q |
127 |
tcgaggagggttgtcgcggtttttgttatgatgactatggctgatttttgtgatcagctttttggttttcaagatatgttgtttgagaactttgatggta |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1965 |
tcgaggagggttgtcgcggtttttgttatgatgactatggctgatttttgtgatcagctttttggttttcaagatatgttgtttgagaactttgatggta |
2064 |
T |
|
| Q |
227 |
ggcttgagtttaaagggaacaattttggtgctgtttggcccggaaatggtaagccgggtttgtggttgaattctatttcgaggatgggagctgtttacaa |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2065 |
ggcttgagtttaaagggaacaattttggtgctgtttggccgggaaatggtaagccgggtttgtggttgaattctatttcgaggatgggagctgtttacaa |
2164 |
T |
|
| Q |
327 |
tttgattctgagagaggaagagatattcttggaagaaaagaagaaaatgttgggagtaaaaggagttaatggtgttgattctgagagagatgaacatatt |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2165 |
tttgattctgagagaggaagagatattcttggaagaaaagaagaaaatgttgggagtaaaaggagttaatggtgttgattatgagagagatgaacatatt |
2264 |
T |
|
| Q |
427 |
gagttggttttgccaccggttttcgctaaatgt |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
2265 |
gagttggttttgccaccggttttcgctaaatgt |
2297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University