View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9677_low_20 (Length: 290)
Name: NF9677_low_20
Description: NF9677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9677_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 274
Target Start/End: Original strand, 46670362 - 46670644
Alignment:
| Q |
9 |
agcataggaagtgtcgatgaatttgtttgcgacggcattgaagccgccacagatgtattcggcagcggctgtggagtttgcgcttccgccgaggagagcg |
108 |
Q |
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| T |
46670362 |
agcataggaagtgtcgatgaatttgtttgcgacggcattgaagccgccacagatgtattcggcagcggctgtggagtttgcgcttccgccgaggagagcg |
46670461 |
T |
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| Q |
109 |
tggaggtcggaggtggaacaggtgaaagtagccatggtgg---acagtggtggtaatctcaggaagaagggttatactcttttctccaacctcttcttga |
205 |
Q |
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| T |
46670462 |
tggaggtcggaggcggaacaggtgaaagtagccatggtggacaacagtgatggtaatcgcaggaagaagggttatactcttttctccaacctcttcttga |
46670561 |
T |
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| Q |
206 |
ggtagagaaagagagtgaa------------attgaggtggtgtgtgt--tggtataaataagggtgttttcaacaaaaatct |
274 |
Q |
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| T |
46670562 |
ggtagagaaagagagtgaaattggaatcattattgaggtggtgtgtgttgtggtataaataagggtgttttcaacaaaaatct |
46670644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 10 - 143
Target Start/End: Original strand, 39642166 - 39642299
Alignment:
| Q |
10 |
gcataggaagtgtcgatgaatttgtttgcgacggcattgaagccgccacagatgtattcggcagcggctgtggagtttgcgcttccgccgaggagagcgt |
109 |
Q |
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||||||| ||||| |||||||||||||| |||||||| |||||| |||||||||||||||||||||||||| ||||| | | ||||||||||| || |
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| T |
39642166 |
gcataggttgtgtcaatgaatttgtttgcaacggcattaaagccgttgcagatgtattcggcagcggctgtggaatttgcaccactgccgaggagagtgt |
39642265 |
T |
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| Q |
110 |
ggaggtcggaggtggaacaggtgaaagtagccat |
143 |
Q |
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| T |
39642266 |
tgaggtcggaggcggagcaggtgaaagaagccat |
39642299 |
T |
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