View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9677_low_21 (Length: 288)
Name: NF9677_low_21
Description: NF9677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9677_low_21 |
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| [»] scaffold0164 (1 HSPs) |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 27147926 - 27148181
Alignment:
| Q |
15 |
caaagggtatttttcatattgaattgaaatggataaagcatggtcttccctttctaccaccatagattcaaacaagttctcagacaaatccacatctatc |
114 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
27147926 |
caaaggatatttttcatattgaattgaaatggataaagcatggtcttccctttctaccaccacagattcaaacaagttctcagacaaatccacatctttc |
27148025 |
T |
|
| Q |
115 |
aagactctagcaaaagtaccaaatcgtctatgttgtgtagcttcatcaatggataaaggtgtgcccaaacctgaagctatttcaaacaaagtctgttttt |
214 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27148026 |
aagactctagcaaaaataccaaaacgtctatgttgtgtagcttcatcaatggataaaggtgtgcccaaacctgaagctatttcaaacaaagtctgttttt |
27148125 |
T |
|
| Q |
215 |
cccagtattctggaggtacgttcagaaatcttatccagatttgtgcatgagtttgt |
270 |
Q |
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||||||||||| |||||| |||||||||||||| ||| |||||||||||| ||||| |
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| T |
27148126 |
cccagtattcttgaggtaggttcagaaatcttacccaaatttgtgcatgaatttgt |
27148181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 9446018 - 9445767
Alignment:
| Q |
18 |
agggtatttttcatattgaattgaaatggataaagcatggtcttccctttctaccaccatagattcaaaca-agttctcagacaaatccacatctatcaa |
116 |
Q |
| |
|
||||| |||||||||||| ||||| || || |||||||| |||||||| ||||| |||| | ||||||||| || | ||||||||||| ||||| | ||| |
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| T |
9446018 |
agggtgtttttcatattggattgatattgacaaagcatgatcttccctctctactaccacatattcaaacatagat-tcagacaaatcaacatcaaccaa |
9445920 |
T |
|
| Q |
117 |
gactctagcaaaagtaccaaatcgtctatgttgtgtagcttcatcaatggataaaggtgtgcccaaacctgaagctatttcaaacaaagtctgtttttcc |
216 |
Q |
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|| |||||||| ||| || ||||||||| || ||||||||| ||| || |||||||||||||||||||| |||||||||||||| |||||||| ||| |
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| T |
9445919 |
taccctagcaaagatactaatacgtctatgtagtatagcttcataaattgacaaaggtgtgcccaaacctgatgctatttcaaacaatgtctgtttctcc |
9445820 |
T |
|
| Q |
217 |
cagtattctggaggtacgttcagaaatcttatccagatttgtgcatgagtttg |
269 |
Q |
| |
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|| ||||| || || |||||||||||||| ||| ||||||||||| ||||| |
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| T |
9445819 |
caatattcctaagttaagttcagaaatcttacccaaatttgtgcatgtgtttg |
9445767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 15485420 - 15485675
Alignment:
| Q |
15 |
caaagggtatttttcatattgaattgaaatggataaagcatggtcttccctttctaccaccatagattcaaacaagttctcagacaaatccacatctatc |
114 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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|
| T |
15485420 |
caaagggtgtttttcatattgaattgaaatggataaagcatggtcttccctttctaccaccacagattcaaacaagttctcaaacaaatccacatctatc |
15485519 |
T |
|
| Q |
115 |
aagactctagcaaaagtaccaaatcgtctatgttgtgtagcttcatcaatggataaaggtgtgcccaaacctgaagctatttcaaacaaagtctgttttt |
214 |
Q |
| |
|
||||||||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15485520 |
aagactctagcaaaaataccaaaacgtctacgttgtgtagtttcatcaatggataaaggtgtgcccaaacctgaagctatttcaaacaaagtctgttttt |
15485619 |
T |
|
| Q |
215 |
cccagtattctggaggtacgttcagaaatcttatccagatttgtgcatgagtttgt |
270 |
Q |
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||||||||||| |||||| ||| |||||||||| ||||||||| |||||||||||| |
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| T |
15485620 |
cccagtattcttgaggtaggtttagaaatcttacccagatttgagcatgagtttgt |
15485675 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 25876931 - 25876683
Alignment:
| Q |
18 |
agggtatttttcatattgaattgaaatggataaagcatggtcttccctttctaccaccatagattcaaacaagttctcagacaaatccacatctatcaag |
117 |
Q |
| |
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|||| ||||||||||||| ||||| | || |||||||| || ||||| || ||||| | ||||||||||| | |||||||||| |||||| | |||| |
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| T |
25876931 |
agggaatttttcatattggattgatacagacaaagcatgatcatccctctccaccacaacagattcaaacattgtttcagacaaattcacatcaa-caag |
25876833 |
T |
|
| Q |
118 |
a-ctctagcaaaagtaccaaatcgtctatgttgtgtagcttcatcaatggataaaggtgtgcccaaacctgaagctatttcaaacaaagtctgtttttcc |
216 |
Q |
| |
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| ||| |||||| | || || |||||||||||||| || |||||||| |||||||| |||||||| ||||||||||||||||| || || ||||| ||| |
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| T |
25876832 |
aactcgtgcaaaaattcccaaacgtctatgttgtgtggcctcatcaattgataaaggcgtgcccaatcctgaagctatttcaaataatgtatgtttctcc |
25876733 |
T |
|
| Q |
217 |
cagtattctggaggtacgttcagaaatcttatccagatttgtgcatgagt |
266 |
Q |
| |
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|| |||||| |||| | ||| |||||||||| ||| | |||||||||||| |
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|
| T |
25876732 |
caatattcttgaggaaggtttagaaatcttacccaaacttgtgcatgagt |
25876683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 148 - 270
Target Start/End: Original strand, 22453458 - 22453580
Alignment:
| Q |
148 |
tgtgtagcttcatcaatggataaaggtgtgcccaaacctgaagctatttcaaacaaagtctgtttttcccagtattctggaggtacgttcagaaatctta |
247 |
Q |
| |
|
||||||||||||||||||| ||||| || |||| |||||| || ||||||||||| || ||||||||||| |||||| |||||| ||||| || |||| |
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| T |
22453458 |
tgtgtagcttcatcaatggtcaaaggggtacccagacctgatgcaatttcaaacaacgtttgtttttcccaatattcttgaggtaagttcatgaacctta |
22453557 |
T |
|
| Q |
248 |
tccagatttgtgcatgagtttgt |
270 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
22453558 |
cccagatttgtgcatgagtttgt |
22453580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 199
Target Start/End: Complemental strand, 14046517 - 14046398
Alignment:
| Q |
80 |
attcaaacaagttctcagacaaatccacatctatcaagactctagcaaaagtaccaaatcgtctatgttgtgtagcttcatcaatggataaaggtgtgcc |
179 |
Q |
| |
|
|||||||||| |||||| |||||||||||| || || |||||||||||| ||||||| |||| |||||||| |||||||| | | ||||||||| |
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| T |
14046517 |
attcaaacaatttctcactcaaatccacatcaattaacactctagcaaaaagcccaaatctcctattctgtgtagcatcatcaatagtaagaggtgtgcc |
14046418 |
T |
|
| Q |
180 |
caaacctgaagctatttcaa |
199 |
Q |
| |
|
||||| ||||||||||||| |
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|
| T |
14046417 |
taaaccagaagctatttcaa |
14046398 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 3085 - 2902
Alignment:
| Q |
19 |
gggtatttttcatattgaattgaaatggataaagcatggtcttccctttctaccaccatagattcaaacaagttctcagacaaatccacatctatcaaga |
118 |
Q |
| |
|
|||| ||| ||||| |||| |||||| || |||||||| || || || || || || | ||| ||||||| ||| |||||||| |||||||| ||||| | |
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|
| T |
3085 |
gggtgtttctcatactgaactgaaattgacaaagcatgatcctctctatccactacaacagactcaaacaggttttcagacaagtccacatcaatcaaaa |
2986 |
T |
|
| Q |
119 |
ctctagcaaaagtaccaaatcgtctatgttgtgtagcttcatcaatggataaaggtgtgcccaaacctgaagctatttcaaaca |
202 |
Q |
| |
|
| ||||||||| ||||||||| | |||||||||| |||||||||||| ||||| || |||| |||||||||||||| |||| |
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|
| T |
2985 |
ccctagcaaaaaaaccaaatcgcttttgttgtgtagattcatcaatggacaaaggagtacccaggcctgaagctatttctaaca |
2902 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 66674 - 66491
Alignment:
| Q |
19 |
gggtatttttcatattgaattgaaatggataaagcatggtcttccctttctaccaccatagattcaaacaagttctcagacaaatccacatctatcaaga |
118 |
Q |
| |
|
|||| ||| ||||| |||| |||||| || |||||||| || || || || || || | ||| ||||||| ||| ||||||||||||||||| ||||| | |
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|
| T |
66674 |
gggtgtttctcatactgaactgaaattgacaaagcatgatcctctctatccactacaacagactcaaacaggttttcagacaaatccacatcaatcaaaa |
66575 |
T |
|
| Q |
119 |
ctctagcaaaagtaccaaatcgtctatgttgtgtagcttcatcaatggataaaggtgtgcccaaacctgaagctatttcaaaca |
202 |
Q |
| |
|
| ||||||||| || |||||| | |||||||||| |||||||||||| ||||| || |||| |||||||||||||| |||| |
|
|
| T |
66574 |
ccctagcaaaaaaactaaatcgcttttgttgtgtagattcatcaatggacaaaggagtacccaggcctgaagctatttctaaca |
66491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 24979054 - 24979109
Alignment:
| Q |
139 |
cgtctatgttgtgtagcttcatcaatggataaaggtgtgcccaaacctgaagctat |
194 |
Q |
| |
|
||||||||||| || ||||||||||||| || ||| || ||||||||||||||||| |
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|
| T |
24979054 |
cgtctatgttgagttgcttcatcaatggttagaggggttcccaaacctgaagctat |
24979109 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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