View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9677_low_22 (Length: 271)
Name: NF9677_low_22
Description: NF9677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9677_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 48 - 253
Target Start/End: Complemental strand, 55675033 - 55674828
Alignment:
| Q |
48 |
gttgctgctaatattcaagcctttcaccgtctccttaattttccttatccttaggcaataaccaagtgttttagggatgagtctcacttagtgaacactt |
147 |
Q |
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| T |
55675033 |
gttgctgctaatattcaagcctttcaccgtctccttaattttccttatccttaggcaataaccaagtgttttagggatgagtctcacttagtgaacactt |
55674934 |
T |
|
| Q |
148 |
gagtattgtaatttgtagtagcatttcatgaattgtttgttcctgatagcaattcatttctttatgattagaacgaacctattctcatatatactatgtt |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55674933 |
gagtattgtaatttgtagtagcatttcatgaattgtttgttcctgatagcaattcatttctttatgattagaacgaacctattctcatatatactatgtt |
55674834 |
T |
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| Q |
248 |
gatttt |
253 |
Q |
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|||||| |
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| T |
55674833 |
gatttt |
55674828 |
T |
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