View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9677_low_24 (Length: 271)
Name: NF9677_low_24
Description: NF9677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9677_low_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 38866292 - 38866041
Alignment:
| Q |
18 |
gtcatttgacttgattaagagtcagtcatacatggcactataaacaagctcataaatcattttataattatgcattatattgaaagtgg----gcaatat |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
38866292 |
gtcatttgacttgattaagagtcagtcatacatggcactataaacaagctcataaatcattttataattatgcattatactgaaagtggctaagcaatat |
38866193 |
T |
|
| Q |
114 |
tgcatatgacttgtgacatgcatatttccaacataagaccaccaagtgtcttggg-agcaataaaatgtcccacatcggttagaacataaaatatgcaat |
212 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38866192 |
tgcatatgacctgtgacatgcatatttccaacataagaccaccaagtgtcttggggagcaataaaatgtcccacatcggttagaacataaaatatgcaat |
38866093 |
T |
|
| Q |
213 |
tgtttataaacttccaacacagccaattgttcgctgagttgattaacaccaa |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38866092 |
tgtttataaacttccaacacagccaattgttcgctgagttgattaacaccaa |
38866041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 45 - 264
Target Start/End: Original strand, 38807146 - 38807377
Alignment:
| Q |
45 |
atacatggcactataaacaagctcataaatcattttataattatgcattatattgaaagtgggcaa------------tattgcatatgacttgtgacat |
132 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||| ||||||| |||||||||| || |||||||||||| |||||||| |
|
|
| T |
38807146 |
atacatggcactataaacaagctcataagttattttataattatacattatactgaaagtgggtaagcatgaattaaatattgcatatgatgtgtgacat |
38807245 |
T |
|
| Q |
133 |
gcatatttccaacataagaccaccaagtgtcttgggagcaataaaatgtcccacatcggttagaacataaaatatgcaattgtttataaacttccaacac |
232 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||| ||||||| ||||||| ||||||| |||||||||| |
|
|
| T |
38807246 |
gcatatttccaacataagaccactaactgtcttgggagcaataaaatgtcccacatcgtttaaaacataattaatgcaatggtttataggcttccaacac |
38807345 |
T |
|
| Q |
233 |
agccaattgttcgctgagttgattaacaccaa |
264 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
38807346 |
agccaattgtttgctgagttgattaacaccaa |
38807377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 45 - 264
Target Start/End: Complemental strand, 38868224 - 38868004
Alignment:
| Q |
45 |
atacatggcactataaacaagctcataaatcatttt--ataattatgcattatattgaaagtgggcaatattgcatatgacttgtgacatgcatatttcc |
142 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||| | ||||| ||| |||| | | |||||| || ||||||||| |||||||||||||||||| |
|
|
| T |
38868224 |
atacatgccactataaacaagctcataaattattgtgtataatcatgacttatgatcagagtgggtaaatatgcatatgatatgtgacatgcatatttcc |
38868125 |
T |
|
| Q |
143 |
aacataagaccaccaagtgtcttgggagcaataaaatgtcccacatcggttagaacataaaatatgcaattgtttataaacttccaacacagccaattgt |
242 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| ||||||| ||| |||||| |||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
38868124 |
aacataagaccattaattgtcttgggagcaataaaatgtctcacatcgtttaaaacatagaatatgcaatggtttatgtccttccaacacagccaattgt |
38868025 |
T |
|
| Q |
243 |
tcgctgagttgattaacaccaa |
264 |
Q |
| |
|
| ||||| |||||||||||||| |
|
|
| T |
38868024 |
tagctga-ttgattaacaccaa |
38868004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 39310881 - 39310785
Alignment:
| Q |
168 |
gagcaataaaatgtcccacatcggttagaacataaaatatgcaattgtttataaacttccaacacagccaattgttcgctgagttgattaacaccaa |
264 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39310881 |
gagcaataaaatgtcccacatcgtttaaaacatagaatatgcaatggtttataaacttccaacacagccaattgttcgctgagttgatttacaccaa |
39310785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 38749953 - 38750049
Alignment:
| Q |
168 |
gagcaataaaatgtcccacatcggttagaacataaaatatgcaattgtttataaacttccaacacagccaattgttcgctgagttgattaacaccaa |
264 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||| ||| |||||||| ||||||||||||||| ||||| |||||||||| ||||||||| |
|
|
| T |
38749953 |
gagcaataaaatgtcccacatcgtttagaacatagaatatgaaatggtttataaccttccaacacagccatttgtttgctgagttgaataacaccaa |
38750049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 38599086 - 38599004
Alignment:
| Q |
18 |
gtcatttgacttgattaagagtcagtca----tacatggcactataaacaagctcataaatcattttataattatgcattata |
96 |
Q |
| |
|
|||||||||| | |||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38599086 |
gtcatttgacataattaagagtcggtcaattatacatggcactataaacaagcttataaatcattttataattatgcattata |
38599004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 38849149 - 38849053
Alignment:
| Q |
168 |
gagcaataaaatgtcccacatcggttagaacataaaatatgcaattgtttataaacttccaacacagccaattgttcgctgagttgattaacaccaa |
264 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | ||||| || |||||||| |||||||||||| | ||||| |||||||||||||||||||| |
|
|
| T |
38849149 |
gagcaataaaatgtcccacatcgtttagaacaaagcatatgaaacggtttataagcttccaacacagggatttgtttgctgagttgattaacaccaa |
38849053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 38749785 - 38749866
Alignment:
| Q |
18 |
gtcatttgacttgattaagagtcagtc----atacatggcactataaacaagctcataaatcattttataattatgcattat |
95 |
Q |
| |
|
|||||||||| | |||||||||||||| ||||||||| |||||||||| |||||||| ||| |||||| |||| |||| |
|
|
| T |
38749785 |
gtcatttgacataattaagagtcagtcaattatacatggccttataaacaaggtcataaattattgtataatcatgcgttat |
38749866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University