View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9677_low_29 (Length: 237)
Name: NF9677_low_29
Description: NF9677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9677_low_29 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 9059 - 9263
Alignment:
| Q |
15 |
cagagaaagataattgcgcctgagttgtacctagacaaggtgaaggtaagtggaatttgaataaatcgtcattgttaggcgatgaactatttagtacaaa |
114 |
Q |
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| T |
9059 |
cagagaaagataattgcgcctgagttgtacctagacaaggtgaaggtaagtggaatttgaataaatcgtcattgttaggcgatgaactatttagtacaaa |
9158 |
T |
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| Q |
115 |
ttttcgtcatatagcggctatagaactatagtatagtggaatttgcacaaaacgctatttcttcgcaatccacaattgacaacactaatggtattgctgt |
214 |
Q |
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| T |
9159 |
ttttcgtcatatagcggctatagaactatagtatagtggaatttgcacaaaacgctatttcttcgcaatccgcaattgacaacactaatggtattgctgt |
9258 |
T |
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| Q |
215 |
cacat |
219 |
Q |
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||||| |
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| T |
9259 |
cacat |
9263 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 19206559 - 19206608
Alignment:
| Q |
15 |
cagagaaagataattgcgcctgagttgtacctagacaaggtgaaggtaag |
64 |
Q |
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| T |
19206559 |
cagaggaagataatcgcgcctgaattgtacctagacaaggtgaaggtaag |
19206608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 19206905 - 19206937
Alignment:
| Q |
187 |
caattgacaacactaatggtattgctgtcacat |
219 |
Q |
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| T |
19206905 |
caattgacaacactaatggtattgctgtcacat |
19206937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 6586592 - 6586653
Alignment:
| Q |
131 |
gctatagaactatagtatagtggaatttgcacaaaacgctatttcttcgcaatccacaattga |
193 |
Q |
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| T |
6586592 |
gctatagaactattgcatagaggaatttgaacaaaccgctattt-tccgcaatccacaattga |
6586653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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