View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9677_low_32 (Length: 236)
Name: NF9677_low_32
Description: NF9677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9677_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 19096406 - 19096569
Alignment:
| Q |
55 |
acaaatctactactagtataaataatacataaaactcaagtcaaagatgtcaaatatctagtagagtatgtccatcattgatgaggtttaaaagattaaa |
154 |
Q |
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| T |
19096406 |
acaaatctactactagtataaataatacataaaactcaagtcaaagatgtcaaatatctagtagagtatgtccatcattgatgaggtttaaaagattaaa |
19096505 |
T |
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| Q |
155 |
tttttgttggaagatgtaaaatcctgtgaatattattgcatgaagcaaatagatctagaattat |
218 |
Q |
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| T |
19096506 |
tttttgttggaagatgtaaaattctgtgaatattattgcatgaagcaaatagatctagaattat |
19096569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 19096308 - 19096406
Alignment:
| Q |
1 |
aaatactaaagatcaaagtcaaaccaaacatacgatttctaactccaaaccaatacaaatctactactagtataaataatacataaaactcaagtcaaa |
99 |
Q |
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| T |
19096308 |
aaatactaaagatcaaagtcaaaccaaacatacgagttctaactccaaaccaatacaaatctactactagtataaacaatacataaaactcaaatcaaa |
19096406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 20670852 - 20670705
Alignment:
| Q |
1 |
aaatactaaagatcaaagtcaaaccaaacatacgatttctaactccaaaccaatacaaatctactactagtataaataatacataaaactcaagtcaaag |
100 |
Q |
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| T |
20670852 |
aaatactaaagaccaaagtcaaaccaaacaaacaagtattaactccaaaccaatacaaatctactactagtataaataatacataaaactcaaatcaaga |
20670753 |
T |
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| Q |
101 |
atgtc--aaatatctagtagagtatgtccatcattgatgaggtttaaa |
146 |
Q |
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| T |
20670752 |
atgtctaatatatatagtagagtatgtccaacattgatgaagtttaaa |
20670705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 20684368 - 20684331
Alignment:
| Q |
183 |
aatattattgcatgaagcaaatagatctagaattatat |
220 |
Q |
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| T |
20684368 |
aatactattgcatgaagaaaatagatctagaattatat |
20684331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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