View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9677_low_38 (Length: 227)

Name: NF9677_low_38
Description: NF9677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9677_low_38
NF9677_low_38
[»] chr7 (29 HSPs)
chr7 (9-227)||(12419393-12419611)
chr7 (9-207)||(23859059-23859257)
chr7 (9-207)||(27237342-27237539)
chr7 (9-127)||(7398437-7398555)
chr7 (12-204)||(12981315-12981505)
chr7 (9-209)||(2611177-2611378)
chr7 (9-126)||(9021799-9021915)
chr7 (42-207)||(23744815-23744980)
chr7 (42-209)||(21763505-21763670)
chr7 (12-126)||(6765680-6765794)
chr7 (9-127)||(36891564-36891682)
chr7 (24-127)||(8171537-8171640)
chr7 (24-127)||(38414874-38414977)
chr7 (81-171)||(9014133-9014222)
chr7 (12-112)||(20153190-20153290)
chr7 (47-127)||(26254017-26254097)
chr7 (87-206)||(23020404-23020522)
chr7 (24-128)||(20091278-20091382)
chr7 (24-127)||(19692095-19692198)
chr7 (42-210)||(38971272-38971439)
chr7 (27-125)||(36902924-36903022)
chr7 (24-116)||(12596296-12596388)
chr7 (24-128)||(48983841-48983945)
chr7 (84-127)||(18776764-18776807)
chr7 (84-127)||(29077281-29077324)
chr7 (24-122)||(24525688-24525786)
chr7 (47-116)||(8239711-8239780)
chr7 (24-116)||(10955485-10955577)
chr7 (24-104)||(23551092-23551172)
[»] chr5 (40 HSPs)
chr5 (9-207)||(11242235-11242432)
chr5 (11-206)||(2530815-2531009)
chr5 (10-126)||(14318382-14318498)
chr5 (9-127)||(2024638-2024756)
chr5 (27-207)||(26718865-26719045)
chr5 (27-207)||(26988609-26988789)
chr5 (9-127)||(34425889-34426007)
chr5 (9-126)||(2412074-2412191)
chr5 (9-127)||(36868872-36868990)
chr5 (14-125)||(22648734-22648845)
chr5 (12-192)||(40794257-40794438)
chr5 (14-127)||(33037771-33037884)
chr5 (9-173)||(1366476-1366640)
chr5 (11-203)||(24395727-24395918)
chr5 (24-127)||(27079012-27079115)
chr5 (84-207)||(10407522-10407645)
chr5 (87-209)||(35080686-35080806)
chr5 (9-126)||(10543660-10543776)
chr5 (15-104)||(15639635-15639724)
chr5 (84-127)||(606215-606258)
chr5 (24-127)||(30854330-30854433)
chr5 (24-127)||(34756362-34756465)
chr5 (24-116)||(9364292-9364384)
chr5 (24-116)||(16198801-16198893)
chr5 (84-128)||(27530544-27530588)
chr5 (24-127)||(28822338-28822441)
chr5 (24-210)||(38869276-38869462)
chr5 (24-116)||(19523200-19523292)
chr5 (25-113)||(27924084-27924172)
chr5 (47-127)||(31881430-31881510)
chr5 (84-115)||(22875003-22875034)
chr5 (24-127)||(23284058-23284161)
chr5 (84-127)||(31194608-31194651)
chr5 (84-126)||(7338060-7338102)
chr5 (22-116)||(36187886-36187980)
chr5 (42-116)||(40389543-40389617)
chr5 (143-208)||(27530614-27530679)
chr5 (84-116)||(2274951-2274983)
chr5 (84-116)||(15480096-15480128)
chr5 (24-116)||(16799334-16799426)
[»] chr4 (44 HSPs)
chr4 (12-208)||(36118376-36118571)
chr4 (9-192)||(52468277-52468459)
chr4 (9-173)||(39329344-39329508)
chr4 (10-127)||(24396926-24397043)
chr4 (9-203)||(27112021-27112214)
chr4 (12-203)||(10041921-10042113)
chr4 (12-207)||(40217226-40217419)
chr4 (18-115)||(2135331-2135428)
chr4 (84-207)||(24614019-24614143)
chr4 (24-127)||(2790739-2790842)
chr4 (10-207)||(51691838-51692032)
chr4 (45-206)||(39655172-39655334)
chr4 (9-122)||(45656166-45656279)
chr4 (14-105)||(4167911-4168002)
chr4 (14-116)||(37744918-37745021)
chr4 (24-127)||(54780783-54780886)
chr4 (85-207)||(30507037-30507162)
chr4 (136-204)||(4167843-4167911)
chr4 (11-127)||(36362869-36362984)
chr4 (9-124)||(36178664-36178778)
chr4 (24-127)||(43455529-43455632)
chr4 (24-127)||(47128993-47129096)
chr4 (143-205)||(11906822-11906884)
chr4 (24-207)||(34027585-34027768)
chr4 (24-126)||(38209590-38209692)
chr4 (24-127)||(19498510-19498611)
chr4 (24-116)||(37777232-37777324)
chr4 (24-128)||(54083239-54083343)
chr4 (143-207)||(5893137-5893201)
chr4 (56-112)||(11906904-11906960)
chr4 (84-116)||(15735156-15735188)
chr4 (24-116)||(32915391-32915483)
chr4 (84-127)||(9578662-9578705)
chr4 (84-127)||(10978966-10979009)
chr4 (24-127)||(34768572-34768675)
chr4 (24-103)||(40089522-40089601)
chr4 (84-127)||(48209306-48209349)
chr4 (22-115)||(5128852-5128945)
chr4 (42-127)||(32128608-32128693)
chr4 (84-116)||(1105598-1105630)
chr4 (84-116)||(10428206-10428238)
chr4 (84-116)||(13460273-13460305)
chr4 (87-127)||(16922327-16922367)
chr4 (84-116)||(37514725-37514757)
[»] chr2 (35 HSPs)
chr2 (10-209)||(21665618-21665816)
chr2 (9-175)||(24035496-24035662)
chr2 (11-201)||(38400785-38400975)
chr2 (14-201)||(16096998-16097185)
chr2 (9-126)||(16227368-16227485)
chr2 (9-173)||(13800497-13800662)
chr2 (9-128)||(12134038-12134157)
chr2 (9-126)||(11912757-11912874)
chr2 (9-200)||(7742055-7742251)
chr2 (80-208)||(22727375-22727503)
chr2 (9-76)||(11952656-11952723)
chr2 (25-209)||(27506657-27506841)
chr2 (136-201)||(37182756-37182821)
chr2 (24-127)||(6965007-6965110)
chr2 (24-127)||(12337447-12337550)
chr2 (24-126)||(10762565-10762667)
chr2 (24-122)||(24410437-24410535)
chr2 (62-192)||(34694013-34694143)
chr2 (62-192)||(34716425-34716555)
chr2 (24-127)||(9046029-9046133)
chr2 (24-127)||(3155217-3155320)
chr2 (24-127)||(4505894-4505997)
chr2 (24-127)||(29939861-29939964)
chr2 (87-126)||(42029208-42029247)
chr2 (9-127)||(28425709-28425827)
chr2 (90-204)||(11952511-11952624)
chr2 (143-192)||(12694798-12694847)
chr2 (24-127)||(26716128-26716232)
chr2 (84-172)||(10252476-10252564)
chr2 (84-127)||(40636198-40636241)
chr2 (9-66)||(37182655-37182712)
chr2 (84-116)||(3953066-3953098)
chr2 (84-116)||(7162844-7162876)
chr2 (84-116)||(8907089-8907121)
chr2 (143-203)||(12133959-12134019)
[»] chr1 (34 HSPs)
chr1 (9-207)||(38546954-38547152)
chr1 (9-207)||(39134638-39134839)
chr1 (9-204)||(45758491-45758688)
chr1 (12-171)||(10925908-10926067)
chr1 (12-126)||(6221678-6221791)
chr1 (9-176)||(43235717-43235886)
chr1 (9-207)||(5533309-5533507)
chr1 (16-127)||(38853527-38853637)
chr1 (24-122)||(9173026-9173124)
chr1 (24-122)||(9181008-9181106)
chr1 (24-116)||(14146312-14146404)
chr1 (24-127)||(5316692-5316795)
chr1 (24-127)||(23185439-23185542)
chr1 (9-126)||(26803945-26804059)
chr1 (24-126)||(4971617-4971719)
chr1 (24-125)||(1366878-1366979)
chr1 (22-127)||(50881440-50881545)
chr1 (47-127)||(6889646-6889726)
chr1 (47-127)||(6891492-6891572)
chr1 (80-127)||(17322621-17322668)
chr1 (22-116)||(6771801-6771895)
chr1 (24-114)||(19955729-19955819)
chr1 (42-127)||(5027579-5027664)
chr1 (42-127)||(21740935-21741020)
chr1 (87-208)||(17169031-17169152)
chr1 (24-116)||(27559649-27559741)
chr1 (24-116)||(41697146-41697238)
chr1 (23-127)||(50146307-50146411)
chr1 (84-127)||(22865459-22865502)
chr1 (84-127)||(44655813-44655856)
chr1 (42-127)||(35392300-35392384)
chr1 (84-116)||(3406490-3406522)
chr1 (84-116)||(3440298-3440330)
chr1 (84-116)||(16140127-16140159)
[»] chr3 (34 HSPs)
chr3 (9-201)||(26279529-26279722)
chr3 (9-127)||(54574826-54574944)
chr3 (9-173)||(25855411-25855574)
chr3 (14-127)||(8420320-8420433)
chr3 (9-170)||(28689317-28689478)
chr3 (84-208)||(49393153-49393276)
chr3 (81-203)||(23641240-23641363)
chr3 (24-116)||(47467688-47467780)
chr3 (24-127)||(21582775-21582878)
chr3 (24-127)||(53506883-53506986)
chr3 (24-127)||(54619202-54619305)
chr3 (47-206)||(3953816-3953975)
chr3 (25-127)||(37168372-37168474)
chr3 (14-176)||(52374650-52374813)
chr3 (42-128)||(54407156-54407242)
chr3 (26-127)||(38681092-38681193)
chr3 (14-126)||(789930-790042)
chr3 (18-126)||(32319155-32319263)
chr3 (24-127)||(34290635-34290738)
chr3 (84-127)||(42453468-42453511)
chr3 (24-127)||(43207237-43207339)
chr3 (24-116)||(8073348-8073440)
chr3 (24-116)||(44708481-44708573)
chr3 (24-116)||(53149324-53149416)
chr3 (24-115)||(9878698-9878789)
chr3 (84-127)||(18372547-18372590)
chr3 (10-93)||(29598097-29598179)
chr3 (84-127)||(36716024-36716067)
chr3 (24-114)||(50939245-50939335)
chr3 (9-59)||(52973385-52973435)
chr3 (143-208)||(36179475-36179540)
chr3 (84-116)||(27078579-27078611)
chr3 (84-116)||(27084376-27084408)
chr3 (84-116)||(42098865-42098897)
[»] scaffold1320 (1 HSPs)
scaffold1320 (15-201)||(1346-1532)
[»] chr8 (32 HSPs)
chr8 (15-201)||(15078750-15078936)
chr8 (10-206)||(41677092-41677290)
chr8 (9-206)||(7944442-7944639)
chr8 (12-201)||(15167338-15167529)
chr8 (11-209)||(39332325-39332520)
chr8 (10-126)||(34048705-34048823)
chr8 (24-127)||(41879182-41879285)
chr8 (14-173)||(5973060-5973219)
chr8 (9-127)||(11290170-11290288)
chr8 (44-199)||(30674330-30674485)
chr8 (9-122)||(23941095-23941208)
chr8 (9-104)||(5942682-5942777)
chr8 (24-128)||(2952219-2952323)
chr8 (9-116)||(5721545-5721652)
chr8 (24-127)||(30883330-30883433)
chr8 (18-173)||(8646201-8646355)
chr8 (87-207)||(38009070-38009191)
chr8 (17-112)||(8102906-8103001)
chr8 (24-127)||(45475818-45475921)
chr8 (84-126)||(9108554-9108596)
chr8 (24-114)||(42600783-42600873)
chr8 (12-125)||(25561496-25561607)
chr8 (24-209)||(23606546-23606731)
chr8 (14-171)||(34789817-34789974)
chr8 (24-127)||(13534686-13534788)
chr8 (24-127)||(13624226-13624328)
chr8 (24-167)||(10917392-10917535)
chr8 (24-126)||(23798261-23798363)
chr8 (84-126)||(34868177-34868219)
chr8 (42-126)||(5860744-5860828)
chr8 (24-113)||(3048530-3048619)
chr8 (84-116)||(37430168-37430200)
[»] chr6 (19 HSPs)
chr6 (13-115)||(21183686-21183788)
chr6 (9-203)||(2477508-2477701)
chr6 (9-209)||(20611779-20611977)
chr6 (12-123)||(6159430-6159541)
chr6 (42-126)||(30121784-30121868)
chr6 (24-116)||(28075787-28075879)
chr6 (24-127)||(13727398-13727501)
chr6 (24-127)||(20711719-20711822)
chr6 (24-127)||(21479498-21479601)
chr6 (24-116)||(24711009-24711101)
chr6 (24-209)||(27788606-27788790)
chr6 (24-116)||(33774121-33774213)
chr6 (28-126)||(1155849-1155947)
chr6 (25-127)||(21280550-21280652)
chr6 (22-127)||(34397859-34397964)
chr6 (24-116)||(30832534-30832626)
chr6 (24-127)||(19737691-19737794)
chr6 (10-103)||(4036938-4037031)
chr6 (24-116)||(17353958-17354050)
[»] scaffold1590 (1 HSPs)
scaffold1590 (9-191)||(193-375)
[»] scaffold0018 (1 HSPs)
scaffold0018 (9-121)||(173515-173627)
[»] scaffold0022 (2 HSPs)
scaffold0022 (9-207)||(40071-40272)
scaffold0022 (9-207)||(138131-138332)
[»] scaffold0007 (1 HSPs)
scaffold0007 (9-209)||(230778-230976)
[»] scaffold0097 (1 HSPs)
scaffold0097 (12-122)||(38914-39024)
[»] scaffold0012 (1 HSPs)
scaffold0012 (18-126)||(206489-206597)
[»] scaffold0182 (1 HSPs)
scaffold0182 (9-126)||(23993-24110)
[»] scaffold0039 (1 HSPs)
scaffold0039 (24-127)||(106539-106642)
[»] scaffold0227 (2 HSPs)
scaffold0227 (12-65)||(16016-16069)
scaffold0227 (84-116)||(16126-16158)
[»] scaffold0070 (1 HSPs)
scaffold0070 (24-116)||(1344-1436)
[»] scaffold0003 (2 HSPs)
scaffold0003 (15-65)||(350269-350319)
scaffold0003 (15-100)||(351360-351445)
[»] scaffold0001 (1 HSPs)
scaffold0001 (65-116)||(183102-183153)


Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 12419611 - 12419393
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12419611 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 12419512  T
Q  109 aatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctga 208  Q
    |||||||| ||||||||||        |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  12419511 aatagaacattgttcttttaaaaaaaatacgttgttattttattacgggcctcttttcacttacaaagccgagcctccggattcataggaacggccctga 12419412  T
Q  209 tgtagagtcctatgtttat 227  Q
    |||||||||||||||||||    
T  12419411 tgtagagtcctatgtttat 12419393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 23859059 - 23859257
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    ||||||||||||||||| ||||||||||| |  |||| |||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||||||    
T  23859059 gggagggtggtttgaggatcctcatgtatacggtagtaattttcatctttgggtgtatcgcatatatacggtacattgtatttatcttttaaaaaattta 23859158  T
Q  109 aatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctg 207  Q
    |||||||| || |||| ||        |||||| |||||||||||| || ||||||||||||||| ||  || |||||  |||| ||||||||| ||||    
T  23859159 aatagaacattattctcttaaacaaaatacgtttttattttattacaggtctcttttcacttacagagtcgagcctccaaattcgtaggaacggacctg 23859257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 27237539 - 27237342
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    ||||||||||||||||||||||||||||| | ||||||||||||| |||| |||  |||||| |||||    || |||||||||||||||||||||||||    
T  27237539 gggagggtggtttgaggttcctcatgtatacgatagtgattttcacctttagattcatcacatatatacaacaccttgtatttatcttttaaaaaattta 27237440  T
Q  109 aatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctg 207  Q
    |||||||| ||||||||||        ||| |||||||||||||||||  ||||||||||||| | ||  || |||||  ||||| |||||||||||||    
T  27237439 aatagaacattgttcttttaaaaaaaatac-ttgttattttattacggatctcttttcacttatagagacgagcctccaaattcacaggaacggccctg 27237342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 7398437 - 7398555
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    |||||||||||||||||||||||||||||    |||||||||||| |||| | ||||||||| ||||| || || |||||||||||||| ||||||||||    
T  7398437 gggagggtggtttgaggttcctcatgtatatggtagtgattttcacctttaggtgtatcacatatatatggcaccttgtatttatctttcaaaaaattta 7398536  T
Q  109 aatagaacgttgttctttt 127  Q
    |||||||| ||||||||||    
T  7398537 aatagaacattgttctttt 7398555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 12981315 - 12981505
Alignment:
Q  12 agggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaat 111  Q
    |||||||||||||||||||||| ||| || |||||||||||| |||||  |||| | |  ||||| || || ||||||||||||||||||||| ||||||    
T  12981315 agggtggtttgaggttcctcatatatacagtagtgattttcacctttgtgtgtaccgcgtatatatggaaccttgtatttatcttttaaaaaaattaaat 12981414  T
Q  112 agaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggcc 204  Q
    ||||| || |||||||         || || ||||||||||||| |||||||||||| |||| | | |||||||||||||| |||||||||||    
T  12981415 agaacattcttctttt--ataaaaaacatttttattttattacgagcctcttttcacctacagaaccgaacctccggattcgtaggaacggcc 12981505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 2611378 - 2611177
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    |||||| | |||||||||||||||||||| || | |||||||||| | |||  |||| | || ||||| |  || |||||||||||||||||||||||||    
T  2611378 gggaggatcgtttgaggttcctcatgtatacagttgtgattttcaccattgtgtgtaccgcatatatacgacaccttgtatttatcttttaaaaaattta 2611279  T
Q  109 aatagaacgttgttctttt-tnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctg 207  Q
    |||||||| ||||||||||         ||| || ||||||||||||  |||||||||||||| || | | || |||||||||||||||||||| |||||    
T  2611278 aatagaacattgttcttttaaaaaaaaatacttttttattttattacaagcctcttttcacttgcagaaccgagcctccggattcataggaacgaccctg 2611179  T
Q  208 at 209  Q
    ||    
T  2611178 at 2611177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 9021915 - 9021799
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    |||||||||||||||||| |||||||||| |  |||||||||||| |||||| |||| | || ||||| || ||||||||||||||||||||||||||||    
T  9021915 gggagggtggtttgaggt-cctcatgtatacggtagtgattttcacctttgggtgtaccgcatatatacggcacattgtatttatcttttaaaaaattta 9021817  T
Q  109 aatagaacgttgttcttt 126  Q
    ||||| |  |||||||||    
T  9021816 aatagcaaattgttcttt 9021799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 42 - 207
Target Start/End: Original strand, 23744815 - 23744980
Alignment:
Q  42 tagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttctttttnnnnnnntacgtt 141  Q
    |||||||||| |||||| | |||| | || ||||  || || |||||||||||||||||||||||||| |||||| |||||||||||       ||| ||    
T  23744815 tagtgatttttatctttaggtgtaccgcatatatgcggcaccttgtatttatcttttaaaaaatttaattagaacattgttctttttaaaaaaatacatt 23744914  T
Q  142 gttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctg 207  Q
     ||||||| ||||||||||||||||||||| | ||| || |||||  |||| ||||||||||||||    
T  23744915 tttatttttttacgggcctcttttcacttatagagctgagcctccaaattcgtaggaacggccctg 23744980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 209
Target Start/End: Complemental strand, 21763670 - 21763505
Alignment:
Q  42 tagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttctttttnnnnnnntacgtt 141  Q
    ||||||||||||  ||| | |||||| || ||||| | ||| |||||||||||||||||||||||||||||||||  |||||  |||       ||||||    
T  21763670 tagtgattttcactttttggtgtatcgcatatatacgatactttgtatttatcttttaaaaaatttaaatagaacaatgttc--tttaaaaaaatacgtt 21763573  T
Q  142 gttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctgat 209  Q
     ||||||||||||||  ||||||| ||||| | | |||| ||||| ||||  ||||||||||||||||    
T  21763572 tttattttattacggatctctttttacttatagaacagagcctccagatttgtaggaacggccctgat 21763505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 6765794 - 6765680
Alignment:
Q  12 agggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaat 111  Q
    |||||||||||||||| ||| | ||| |  |||||||||||| |||||||||||   |  ||||| |  || ||||||||||||||||||||||||||||    
T  6765794 agggtggtttgaggttactcttatatacggtagtgattttcacctttggatgtacggcttatatacgacaccttgtatttatcttttaaaaaatttaaat 6765695  T
Q  112 agaacgttgttcttt 126  Q
    ||||| |||||||||    
T  6765694 agaacattgttcttt 6765680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 36891564 - 36891682
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    |||||| |||||||||||||||||||||| |  |||||||||||| ||||||||||| |  | |||||    |||||||||| ||| |||||||||| ||    
T  36891564 gggaggatggtttgaggttcctcatgtatacggtagtgattttcacctttggatgtaccgaatatatacaacacattgtattcatcatttaaaaaatata 36891663  T
Q  109 aatagaacgttgttctttt 127  Q
    |||||||| || |||||||    
T  36891664 aatagaacattattctttt 36891682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 8171640 - 8171537
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| |||||||||| ||| |||| | || ||||| || || |||||||||||||||||||||| |||||||||| ||| ||    
T  8171640 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 8171541  T
Q  124 tttt 127  Q
    ||||    
T  8171540 tttt 8171537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 38414977 - 38414874
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| || |||| ||||||| |||||| |||| |||| ||||| |  || || |||||||||||||||||||  ||||||||||||| ||    
T  38414977 ggttcctcatgtatacagtagtcattttcacctttgggtgtaccacatatatacgtcaccttatatttatcttttaaaaaatacaaatagaacgttgctc 38414878  T
Q  124 tttt 127  Q
    ||||    
T  38414877 tttt 38414874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 9014222 - 9014133
Alignment:
Q  81 acattgtatttatcttttaaaaaatttaaatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcactta 171  Q
    |||||||||||||||||||||||||||||||| ||| |||||| |||        |||| | |||||||||||||||||||||||||||||    
T  9014222 acattgtatttatcttttaaaaaatttaaataaaacattgttc-tttaaaaaaaatacggttttattttattacgggcctcttttcactta 9014133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 20153190 - 20153290
Alignment:
Q  12 agggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaat 111  Q
    ||||||||||||| | |||||||||| |   |||||||||||||||||| | |||| || |||||    || ||||||||||||||||||||||||||||    
T  20153190 agggtggtttgagatccctcatgtatacggcagtgattttcatctttgggtttatcgcatatatacaacactttgtatttatcttttaaaaaatttaaat 20153289  T
Q  112 a 112  Q
    |    
T  20153290 a 20153290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 26254017 - 26254097
Alignment:
Q  47 attttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttctttt 127  Q
    |||||||||||||| |||| | || ||||| || || |||||||||||||||||||||| |||||||||| ||| ||||||    
T  26254017 attttcatctttgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 26254097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 23020522 - 23020404
Alignment:
Q  87 tatttatcttttaaaaaatttaaatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctcc 186  Q
    ||||||||||||||||||| |||||  ||||||||||||||        ||| || |||||||||||||| |||||||||||||||| | | |  |||||    
T  23020522 tatttatcttttaaaaaatctaaatgaaacgttgttcttttaaaaaaaatacatttttattttattacggacctcttttcacttacagaaccg-gcctcc 23020424  T
Q  187 ggattcataggaacggccct 206  Q
     ||||| |||||||||||||    
T  23020423 agattcgtaggaacggccct 23020404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 20091382 - 20091278
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| |||||| |||| | || ||||| || || || ||||||||||||||||||| |||||||| | |||||     
T  20091382 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagatcattgttt 20091283  T
Q  124 ttttt 128  Q
    |||||    
T  20091282 ttttt 20091278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 19692095 - 19692198
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| | | ||| ||||||| |||| | |||| | || ||||| || || || ||||||||||||||||||| |||||||||| ||| ||    
T  19692095 ggttcctcatgtatacgaaagtcattttcacctttaggtgtaccgcatatatatggcaccttatatttatcttttaaaaaatataaatagaacattgctc 19692194  T
Q  124 tttt 127  Q
    ||||    
T  19692195 tttt 19692198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 210
Target Start/End: Original strand, 38971272 - 38971439
Alignment:
Q  42 tagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttctttttnnnnnnntacgtt 141  Q
    ||||||||||||  ||| | ||||| ||| ||||| |  || |||||||||||||||||||| |||||||| ||  ||| ||||||        ||| ||    
T  38971272 tagtgattttcacatttaggtgtataacatatatacgacaccttgtatttatcttttaaaaa-tttaaataaaatattgatcttttaaaaaaaatacatt 38971370  T
Q  142 gttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctgatg 210  Q
     ||||||||||||||| ||||||||||||||||||| ||  |||  ||||| ||| ||||||| |||||    
T  38971371 tttattttattacgggtctcttttcacttacaaagccgagtctctagattcgtagaaacggccatgatg 38971439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 36903022 - 36902924
Alignment:
Q  27 tcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttctt 125  Q
    ||||||||||| || || ||||||||| |||| | ||||  ||| ||||| |  |  |||||||||||| |||||||||||||||||||| ||||||||    
T  36903022 tcctcatgtatacagtactgattttcacctttaggtgtacaacatatatacgacatcttgtatttatctattaaaaaatttaaatagaacattgttctt 36902924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 12596388 - 12596296
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    ||||||||||| || |  |||| ||||||| || ||| |||| |||| ||||| || || |||||||||||||| ||||||| ||||||||||    
T  12596388 ggttcctcatgcatacggtagtcattttcacctctgggtgtaccacatatatacggcaccttgtatttatctttaaaaaaatataaatagaac 12596296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 48983945 - 48983841
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| |||||| |||| | || ||||| |  || || ||||||||||||||||||| |||||||| | |||||     
T  48983945 ggttcctcatgtatacggtagttattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagatcattgttt 48983846  T
Q  124 ttttt 128  Q
    |||||    
T  48983845 ttttt 48983841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 127
Target Start/End: Complemental strand, 18776807 - 18776764
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaacgttgttctttt 127  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||    
T  18776807 ttgtatttatcttttaaaaaatataaatagaacattgctctttt 18776764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 127
Target Start/End: Original strand, 29077281 - 29077324
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaacgttgttctttt 127  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||    
T  29077281 ttgtatttatcttttaaaaaatataaatagaacattgctctttt 29077324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 24525786 - 24525688
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgtt 122  Q
    |||||||||||||| |  |||| |||||||  ||||| |||| | || ||| | || || || ||||||||||||||||||| |||||||||| |||||    
T  24525786 ggttcctcatgtatacggtagtcattttcacttttgggtgtaccgcatatacacggcaccttatatttatcttttaaaaaatataaatagaacattgtt 24525688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 8239711 - 8239780
Alignment:
Q  47 attttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||  ||||| |||| |||| ||||| || ||||| ||||||| ||||||||||| ||||||||||    
T  8239711 attttcacatttgggtgtaccacatatatacggcacattatatttattttttaaaaaatataaatagaac 8239780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 10955485 - 10955577
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||| |  |||| ||||||| || ||  |||| | || ||||| || || || ||||||||||||||||||| ||||||||||    
T  10955485 ggttcctcatgtatacggtagtcattttcacctctgagtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaac 10955577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 23551172 - 23551092
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaa 104  Q
    |||||||||||||| |  |||| ||||||| ||||||||||| | || ||||| |  || || ||||||||||||||||||    
T  23551172 ggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacgacaccttatatttatcttttaaaaaa 23551092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 40)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 11242432 - 11242235
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    ||||||||||||||||||||||||||||| |  ||||||||| ||||||||| ||||||||| |||||    |  ||||||||||||||||||||| |||    
T  11242432 gggagggtggtttgaggttcctcatgtatacggtagtgatttccatctttggttgtatcacatatatacatcattttgtatttatcttttaaaaaaatta 11242333  T
Q  109 aatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctg 207  Q
    |||||||| ||||||||||        |||||| ||||||||||||| | ||||||||||||||| ||| || |||||||||||||||||||| |||||    
T  11242332 aatagaacattgttctttt-aaaagaatacgtttttattttattacgagtctcttttcacttacagagccgagcctccggattcataggaacgaccctg 11242235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 2531009 - 2530815
Alignment:
Q  11 gagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaa 110  Q
    ||||||||||||||||||||||||||| || |||||||||||| ||||||||||| |  | ||||| |  |||||||||||||||||||||||| |||||    
T  2531009 gagggtggtttgaggttcctcatgtatacagtagtgattttcacctttggatgtaccgtatatatacgacacattgtatttatcttttaaaaaacttaaa 2530910  T
Q  111 tagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccct 206  Q
    |||||| || |||||||        ||| || ||||||||||||||||||||||||||||||| |||  ||||| | ||||| ||||| |||||||    
T  2530909 tagaacatt-ttcttttaagaaaaatacatttttattttattacgggcctcttttcacttacagagccaaaccttcagattcgtaggagcggccct 2530815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 14318498 - 14318382
Alignment:
Q  10 ggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaa 109  Q
    |||||||||||||||||||||||||||| |  ||||||||||||| ||||||||||||||| ||||| |  || ||||||||||||||||||||||||||    
T  14318498 ggagggtggtttgaggttcctcatgtatacggtagtgattttcatttttggatgtatcacatatatacgacaccttgtatttatcttttaaaaaatttaa 14318399  T
Q  110 atagaacgttgttcttt 126  Q
    ||||||| |||||||||    
T  14318398 atagaacattgttcttt 14318382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 2024756 - 2024638
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    |||||| |||||||||| |||||||||||    ||||||||||||||||||| ||||||||| ||||| || ||||||||||||||||| ||||||||||    
T  2024756 gggaggatggtttgaggatcctcatgtatatggtagtgattttcatctttgggtgtatcacatatatacggcacattgtatttatctttaaaaaaattta 2024657  T
Q  109 aatagaacgttgttctttt 127  Q
    |||||||| ||||||||||    
T  2024656 aatagaacattgttctttt 2024638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 207
Target Start/End: Complemental strand, 26719045 - 26718865
Alignment:
Q  27 tcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttcttt 126  Q
    ||||||||||| |  |||||||||||| |||||  |||||| || ||||| |  || |||||||||||||||||||| |||||||||||| || ||||||    
T  26719045 tcctcatgtatgcggtagtgattttcacctttgagtgtatcgcatatatacgacactttgtatttatcttttaaaaattttaaatagaacattattcttt 26718946  T
Q  127 ttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctg 207  Q
             |||||| ||||||||||||||| ||||||||||||||| | | || ||||||||||||||||||||||||||    
T  26718945 aaaaaaaaatacgtttttattttattacgggtctcttttcacttacagaaccgagcctccggattcataggaacggccctg 26718865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 207
Target Start/End: Complemental strand, 26988789 - 26988609
Alignment:
Q  27 tcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttcttt 126  Q
    ||||||||||| |  |||||||||||| |||||  |||||| || ||||| |  || |||||||||||||||||||| |||||||||||| || ||||||    
T  26988789 tcctcatgtatgcggtagtgattttcacctttgagtgtatcgcatatatacgacactttgtatttatcttttaaaaattttaaatagaacattattcttt 26988690  T
Q  127 ttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctg 207  Q
             |||||| ||||||||||||||| ||||||||||||||| | | || ||||||||||||||||||||||||||    
T  26988689 aaaaaaaaatacgtttttattttattacgggtctcttttcacttacagaaccgagcctccggattcataggaacggccctg 26988609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 34425889 - 34426007
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    ||||||||||||||||||||||||||||| |  || ||||||| |||||| | ||||||||| ||||| || || ||||||||||||||||||||||| |    
T  34425889 gggagggtggtttgaggttcctcatgtatacggtaatgattttaatctttaggtgtatcacatatatacggcaccttgtatttatcttttaaaaaattga 34425988  T
Q  109 aatagaacgttgttctttt 127  Q
    |||||||| ||||||||||    
T  34425989 aatagaacattgttctttt 34426007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 2412074 - 2412191
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    ||||||||||||||||||||||||||||| || ||||||||||||  |||||||| ||| || ||||| |  || |||||||||| ||||||||||||||    
T  2412074 gggagggtggtttgaggttcctcatgtatacagtagtgattttcacatttggatgcatcgcatatatacgacactttgtatttattttttaaaaaattta 2412173  T
Q  109 aatagaacgttgttcttt 126  Q
    |||||||| |||||||||    
T  2412174 aatagaacattgttcttt 2412191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 36868990 - 36868872
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    |||||||||||||||| |||||||||||| |  ||||||||||||  ||||| |||| |||| ||||| |  || ||||||||||||||||||||| |||    
T  36868990 gggagggtggtttgagattcctcatgtatacggtagtgattttcacatttgggtgtaccacatatatacgacaccttgtatttatcttttaaaaaaatta 36868891  T
Q  109 aatagaacgttgttctttt 127  Q
    |||||||| ||||||||||    
T  36868890 aatagaacattgttctttt 36868872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 22648845 - 22648734
Alignment:
Q  14 ggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatag 113  Q
    |||||||||||||| || || ||| || |||||||| ||| ||||||||||  |||| ||||| |  |||||||||||||||||||||||||||||||||    
T  22648845 ggtggtttgaggtttcttatttatacagtagtgattgtcacctttggatgtgccacatatatacgacacattgtatttatcttttaaaaaatttaaatag 22648746  T
Q  114 aacgttgttctt 125  Q
    ||| ||||||||    
T  22648745 aacattgttctt 22648734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 40794438 - 40794257
Alignment:
Q  12 agggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaat 111  Q
    |||||||||||||||| ||||||||| |  |||||||||||| |||| | ||||||| | || || ||  | |||||||| |||||||||||||||||||    
T  40794438 agggtggtttgaggtttctcatgtatacggtagtgattttcaccttttggtgtatcatatatttacggctctttgtatttgtcttttaaaaaatttaaat 40794339  T
Q  112 agaacgttgttctttt-tnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattc 192  Q
    | ||| ||||||||||          ||||| ||||||||||||| ||||||||||||||||| ||| || |||||| ||||    
T  40794338 aaaacattgttcttttaaaaaaaaaaacgtttttattttattacgagcctcttttcacttacagagccgagcctccgaattc 40794257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 33037771 - 33037884
Alignment:
Q  14 ggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatag 113  Q
    |||||||||||||||||||||||| |  || || |||||| |||||| ||||  ||| ||||| | ||  |||||||||||||||||||||||||||||     
T  33037771 ggtggtttgaggttcctcatgtatacggtaatggttttcacctttgggtgtacaacatatatacgatatcttgtatttatcttttaaaaaatttaaataa 33037870  T
Q  114 aacgttgttctttt 127  Q
    ||| ||||||||||    
T  33037871 aacattgttctttt 33037884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 173
Target Start/End: Complemental strand, 1366640 - 1366476
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    ||||||||||| ||||||||||||| ||| |  ||||||||||||  ||| | |||||| || |||||    |  ||||||||||||| |||||||||||    
T  1366640 gggagggtggtatgaggttcctcatatatacggtagtgattttcacatttaggtgtatcgcatatataccacatcttgtatttatcttataaaaaattta 1366541  T
Q  109 aatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttaca 173  Q
    |||||||| ||||||||||        |||||| ||||||| |||||| |||||||| |||||||    
T  1366540 aatagaacattgttcttttaaaaaaaatacgtttttatttttttacggacctctttttacttaca 1366476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 24395727 - 24395918
Alignment:
Q  11 gagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaa 110  Q
    ||||||||||| | ||||||||| ||| |  | |||||||||| ||||||||||||   | |||||    || |||||||||||||||||||||||||||    
T  24395727 gagggtggtttaaagttcctcatctatacggtggtgattttcacctttggatgtattgtatatatacaacaccttgtatttatcttttaaaaaatttaaa 24395826  T
Q  111 tagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggc 203  Q
    |||||| || || ||||        ||| || |||||||||||||||  |||||| | ||||| ||| | |||||||||||| ||||||||||    
T  24395827 tagaacattatt-ttttaaaaaaaatacatttttattttattacgggtttctttttatttacagagccgtacctccggattcgtaggaacggc 24395918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 27079012 - 27079115
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| || |||| ||||||| |||| | |||| | || ||||| || || |||||||||||||||||||||| |||||||||| ||| ||    
T  27079012 ggttcctcatgtatacagtagtcattttcacctttaggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 27079111  T
Q  124 tttt 127  Q
    ||||    
T  27079112 tttt 27079115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 207
Target Start/End: Original strand, 10407522 - 10407645
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacc 183  Q
    |||| |||||||||||||||||||||||||||| ||||||||||        ||| || ||||||||||| || |||||||||||||| | | | |||||    
T  10407522 ttgtgtttatcttttaaaaaatttaaatagaacattgttcttttaaaaaaaatacttttttattttattatggacctcttttcacttatagaaccgaacc 10407621  T
Q  184 tccggattcataggaacggccctg 207  Q
    ||  ||||| |||||||| |||||    
T  10407622 tctagattcgtaggaacgaccctg 10407645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 209
Target Start/End: Complemental strand, 35080806 - 35080686
Alignment:
Q  87 tatttatcttttaaaaaatttaaatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctcc 186  Q
    |||||||||||||||||||||||||| ||| ||||||||||        ||  || |||||||||||||| |||||||||||||||| ||  || ||||     
T  35080806 tatttatcttttaaaaaatttaaataaaacattgttcttttaaaaaaaata--tttttattttattacggccctcttttcacttacagagtcgagcctct 35080709  T
Q  187 ggattcataggaacggccctgat 209  Q
     ||||| ||||||||||||||||    
T  35080708 agattcgtaggaacggccctgat 35080686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 10543660 - 10543776
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    |||||||||||||||| ||||| |||||| |  |||||||||||| ||||||||||||| || |||||    || || ||||||||||||||||||||||    
T  10543660 gggagggtggtttgagattcct-atgtatacggtagtgattttcacctttggatgtatcgcatatatacatcaccttatatttatcttttaaaaaattta 10543758  T
Q  109 aatagaacgttgttcttt 126  Q
    | | |||| || ||||||    
T  10543759 agtggaacattattcttt 10543776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 15639635 - 15639724
Alignment:
Q  15 gtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaa 104  Q
    ||||||| |||||||| |||||| | | ||||||||||||||||||||||||| || ||||| |  || |||||||||||||| ||||||    
T  15639635 gtggtttaaggttccttatgtatacgacagtgattttcatctttggatgtatcgcatatatacgtcaccttgtatttatctttaaaaaaa 15639724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 84 - 127
Target Start/End: Original strand, 606215 - 606258
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaacgttgttctttt 127  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  606215 ttgtatttatcttttaaaaaatttaaatagaacattgttctttt 606258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 30854330 - 30854433
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| | ||||| ||||||| || ||  |||| | || ||||| || || |||||||||||||||||||||| |||||||||| ||| ||    
T  30854330 ggttcctcatgtatacgatagtcattttcacctctgagtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 30854429  T
Q  124 tttt 127  Q
    ||||    
T  30854430 tttt 30854433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 34756465 - 34756362
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| || ||| |||| | || ||||| || || |||||||||||||||||||||| |||||||||| ||| ||    
T  34756465 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 34756366  T
Q  124 tttt 127  Q
    ||||    
T  34756365 tttt 34756362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 9364292 - 9364384
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||| |  |||| ||||||| |||||| |||| | || ||||| || || || ||||||||||||||||||| ||||||||||    
T  9364292 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaac 9364384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 16198893 - 16198801
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||| |  |||| ||||||| |||||| |||||| || ||||| |  || || ||||||||||||||||||| ||||||||||    
T  16198893 ggttcctcatgtatacggtagtcattttcacctttgggtgtatcgcatatatacgacaccttatatttatcttttaaaaaatataaatagaac 16198801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 27530544 - 27530588
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaacgttgttcttttt 128  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||    
T  27530544 ttgtattaatcttttaaaaaatttaaatagaacattgttcttttt 27530588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 28822441 - 28822338
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    ||||| |||||||| |  |||| ||||||| |||||| |||| | || ||||| || || || ||||||||||||||||||| |||||||||| ||| ||    
T  28822441 ggttcatcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctc 28822342  T
Q  124 tttt 127  Q
    ||||    
T  28822341 tttt 28822338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 210
Target Start/End: Complemental strand, 38869462 - 38869276
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||| ||||||||| |  |||| ||||||| |||||| |||| | || ||||| |  || || ||||||||||||||||||| |||||||||| ||| ||    
T  38869462 ggtttctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattgctc 38869363  T
Q  124 tttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctgatg 210  Q
    ||||        |||||| | ||||||| || | |||||||||| |  || ||| || |||||| |||| |||| ||||||||||||    
T  38869362 ttttaaaaaaaatacgttttgattttataactgacctcttttcattcccagagccgagcctccgaattcttagggacggccctgatg 38869276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 19523200 - 19523292
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    ||||||||||||||    |||| ||||||| || ||| |||| | || ||||| || || |||||||||||||||||||||| ||||||||||    
T  19523200 ggttcctcatgtatatggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaac 19523292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 27924084 - 27924172
Alignment:
Q  25 gttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatag 113  Q
    ||||||||||||| |  |||| ||||| | ||||||||||| | || ||||| || || || ||||||||||||||||||| |||||||    
T  27924084 gttcctcatgtatacggtagtcatttttacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatag 27924172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 31881510 - 31881430
Alignment:
Q  47 attttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttctttt 127  Q
    |||||||||| |||||||  | || ||||| || ||  ||||||||||||||||||||| |||||||||| ||| ||||||    
T  31881510 attttcatctctggatgttccgcatatatacggcaccgtgtatttatcttttaaaaaatataaatagaacattgctctttt 31881430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 115
Target Start/End: Original strand, 22875003 - 22875034
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaa 115  Q
    ||||||||||||||||||||||||||||||||    
T  22875003 ttgtatttatcttttaaaaaatttaaatagaa 22875034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 23284161 - 23284058
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| |||||||||||||| |||| | || ||||| |  || |||||||||   |||||||||| |||||||||| ||| ||    
T  23284161 ggttcctcatgtatacggtagtcattttcatctttgggtgtaccgcatatatacgacaccttgtatttagtctttaaaaaatataaatagaacattgctc 23284062  T
Q  124 tttt 127  Q
    ||||    
T  23284061 tttt 23284058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 127
Target Start/End: Complemental strand, 31194651 - 31194608
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaacgttgttctttt 127  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||    
T  31194651 ttgtatttatcttttaaaaaatataaatagaacattgctctttt 31194608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 7338060 - 7338102
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaacgttgttcttt 126  Q
    |||||||||||||||||||||| |||||||||| ||| |||||    
T  7338060 ttgtatttatcttttaaaaaatataaatagaacattgctcttt 7338102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 36187980 - 36187886
Alignment:
Q  22 gaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||| ||||||||| |  |||| ||||||| || ||| |||| | || ||||| || || |||||||||| ||||||||||| ||||||||||    
T  36187980 gaggtttctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatattttaaaaaatataaatagaac 36187886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 40389617 - 40389543
Alignment:
Q  42 tagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||| ||||||| ||||||||||| | || ||||| |  || || ||||||||||||||||||| ||||||||||    
T  40389617 tagtcattttcacctttggatgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaac 40389543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 27530614 - 27530679
Alignment:
Q  143 ttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctga 208  Q
    ||||||||||||||||||||||||||||| | | | || ||||   |||| |||||||||||||||    
T  27530614 ttattttattacgggcctcttttcacttatagaaccgagcctctaaattcgtaggaacggccctga 27530679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 2274951 - 2274983
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||||||||||| ||||||||||    
T  2274951 ttgtatttatcttttaaaaaatataaatagaac 2274983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 15480128 - 15480096
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||||||||||| ||||||||||    
T  15480128 ttgtatttatcttttaaaaaatataaatagaac 15480096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 16799426 - 16799334
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||| |  || | ||||||| |||||| |||| | || ||||| || || || ||||||| ||||||||||| ||||||||||    
T  16799426 ggttcctcatgtatacggtaatcattttcacctttgggtgtaccgcatatatacggcaccttatatttattttttaaaaaatataaatagaac 16799334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 36118571 - 36118376
Alignment:
Q  12 agggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaat 111  Q
    ||||||||| |||||| ||||||||| |  ||||||||||||| ||||| ||||||||| ||||| |  || ||||||||||||||||||||||||||||    
T  36118571 agggtggttagaggttactcatgtatacggtagtgattttcatatttgggtgtatcacatatatacgacaccttgtatttatcttttaaaaaatttaaat 36118472  T
Q  112 agaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctga 208  Q
    ||||| ||||||  |||       |||||| ||||||||||||| ||||||||||||||||||||| || | |||| |||| |||||||||||||||    
T  36118471 agaacattgttc-atttaaaaaaatacgtttttattttattacgagcctcttttcacttacaaagccgagcttccgaattcgtaggaacggccctga 36118376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 52468277 - 52468459
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    |||| ||||||||||||||||||||| || |  |||||||||||| |||||||||||| ||| ||||| || || |||||||||||||||||||||||||    
T  52468277 gggaaggtggtttgaggttcctcatgcatacggtagtgattttcacctttggatgtataacatatatacggcaccttgtatttatcttttaaaaaattta 52468376  T
Q  109 aatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattc 192  Q
    |||||||| |||||| ||||       |||||| |||||||||||| | ||||||||||| |||| ||| || |||||| ||||    
T  52468377 aatagaacattgttc-ttttaaaaaaatacgtttttattttattacagacctcttttcacctacagagccgagcctccgaattc 52468459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 173
Target Start/End: Complemental strand, 39329508 - 39329344
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    ||||||||||||||| ||||||| ||||| |  ||  ||||||||||||||| ||||||||| |||||    || |||||||||||||||||||||||||    
T  39329508 gggagggtggtttgatgttcctcctgtatacggtatggattttcatctttgggtgtatcacatatatacaacaccttgtatttatcttttaaaaaattta 39329409  T
Q  109 aatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttaca 173  Q
    || ||||| ||||||||||        || ||| |||||||||||||| ||||||||||||||||    
T  39329408 aagagaacattgttcttttaaaaaaaatatgtttttattttattacggacctcttttcacttaca 39329344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 24396926 - 24397043
Alignment:
Q  10 ggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaa 109  Q
    ||||||| |||||||||||||||||||| | ||||||||||||| |||||  ||||||||| |||||  | || || |||||||||||||||||||||||    
T  24396926 ggagggtagtttgaggttcctcatgtatacgatagtgattttcacctttgagtgtatcacatatatactgcaccttatatttatcttttaaaaaatttaa 24397025  T
Q  110 atagaacgttgttctttt 127  Q
    ||| ||  ||||||||||    
T  24397026 ataaaatattgttctttt 24397043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 9 - 203
Target Start/End: Original strand, 27112021 - 27112214
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    ||||||||||||||||||||||||||||| |  ||||||||||||  ||| | |||||| || ||||| |  || |||||||||||||||||||||||||    
T  27112021 gggagggtggtttgaggttcctcatgtatacggtagtgattttcacattttggtgtatcgcatatatatgtcaccttgtatttatcttttaaaaaattta 27112120  T
Q  109 aatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggc 203  Q
    ||| |||| ||||||  |||       |||  | ||||||||||||||| ||||||||||||||| | | || ||||| ||||  ||||||||||    
T  27112121 aattgaacattgttc-gtttaaaaaaatacaatcttattttattacgggtctcttttcacttacagaaccgagcctccagatttgtaggaacggc 27112214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 10042113 - 10041921
Alignment:
Q  12 agggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaat 111  Q
    |||||| ||||||||||||| ||||| |  ||||||||||||  ||| | ||||||||| | ||| || || |||||||||| |||| ||||||||||||    
T  10042113 agggtgatttgaggttcctcctgtatacggtagtgattttcacatttaggtgtatcacatacatacggcaccttgtatttatttttttaaaaatttaaat 10042014  T
Q  112 agaacgttgttctttt-tnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggc 203  Q
    ||||| ||||||||||         |||| | |||||||| ||||| |||||||||||||||| | | |||||||| ||||| ||||||||||    
T  10042013 agaacattgttcttttaaaaaaaaatacgcttttattttactacggacctcttttcacttacagaactgaacctcccgattcgtaggaacggc 10041921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 40217226 - 40217419
Alignment:
Q  12 agggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaat 111  Q
    |||||||||||||||| |||||||||    || ||||||||||||||||||||||| || ||||| |  || || |||||||||||||||||||||||||    
T  40217226 agggtggtttgaggttactcatgtatatgctaatgattttcatctttggatgtatcgcatatatacgacaccttatatttatcttttaaaaaatttaaat 40217325  T
Q  112 agaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctg 207  Q
    || |   ||||||||          ||||| ||||||||||||| ||||||||||||||||||| | || |||| | |||| |||||| |||||||    
T  40217326 agta--atgttctttaaaaaaaaaaacgtttttattttattacgagcctcttttcacttacaaaaccgagcctctgaattcgtaggaatggccctg 40217419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 2135428 - 2135331
Alignment:
Q  18 gtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaa 115  Q
    |||||||||||||||| ||| | |||||||| || | ||||||||||||| || ||||| |  || ||||||||||||||||||||||||||||||||    
T  2135428 gtttgaggttcctcatatatacgatagtgatgtttacctttggatgtatcgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaa 2135331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 84 - 207
Target Start/End: Original strand, 24614019 - 24614143
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaacgttgttctttttnnnnnnn--tacgttgttattttattacgggcctcttttcacttacaaagcagaa 181  Q
    ||||||||||||||||||||||||||||||||| |||||||||           ||| || ||||||||||||||||||||||||||||||| ||| |||    
T  24614019 ttgtatttatcttttaaaaaatttaaatagaacattgttctttaaaaaaaaaaatacatt-ttattttattacgggcctcttttcacttacagagctgaa 24614117  T
Q  182 cctccggattcataggaacggccctg 207  Q
    ||||| ||||| || |||||||||||    
T  24614118 cctccagattcgtaagaacggccctg 24614143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 2790842 - 2790739
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| |||||| |||| | || ||||| ||||| || ||||||||||||||||||| |||||||||| ||||||    
T  2790842 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggtaccttatatttatcttttaaaaaatataaatagaacattgttc 2790743  T
Q  124 tttt 127  Q
    ||||    
T  2790742 tttt 2790739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 51692032 - 51691838
Alignment:
Q  10 ggagggtggtttgaggttcctcatgtattcaatagtgattttca--tctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattt 107  Q
    ||||||||||||||||||| || |||||    ||||||||||||  | ||| | |||| | || ||||| || || ||||||||||||||||||||||||    
T  51692032 ggagggtggtttgaggttcatcgtgtatatggtagtgattttcactttttttggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaattt 51691933  T
Q  108 aaatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctg 207  Q
    ||||||||| ||| ||||||        ||| |     |||||||||| |||||||||||||| || ||| || ||||||||||| ||||||||||||||    
T  51691932 aaatagaacattgctcttttaaaaaaaatacat-----ttttattacgagcctcttttcacttgcagagccgagcctccggattcgtaggaacggccctg 51691838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 206
Target Start/End: Complemental strand, 39655334 - 39655172
Alignment:
Q  45 tgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttcttttt-nnnnnnntacgttgt 143  Q
    ||||||||| |||||| |||| | || ||||  || || ||||||||||||||||||||||||||||||||| |||||||||||         ||||| |    
T  39655334 tgattttcacctttgggtgtaccgcatatatgcggaactttgtatttatcttttaaaaaatttaaatagaacattgttctttttaaaaatagaacgtttt 39655235  T
Q  144 tattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccct 206  Q
    |||||||||||| |||||||||||| |||| ||  || ||||| ||||  |||||||| ||||    
T  39655234 tattttattacgagcctcttttcacctacagagtcgagcctccagatttgtaggaacgaccct 39655172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 45656166 - 45656279
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    |||||||||||||||||||| |||||||| |  | ||||||||||  ||||||| |||| || ||||| |  || ||| |||||||||||||||||||||    
T  45656166 gggagggtggtttgaggttcgtcatgtatacgttcgtgattttcacatttggatttatcgcatatatatgacaccttgcatttatcttttaaaaaattta 45656265  T
Q  109 aatagaacgttgtt 122  Q
    |||| ||| |||||    
T  45656266 aataaaacattgtt 45656279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 4168002 - 4167911
Alignment:
Q  14 ggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaat 105  Q
    |||| |||||||||||||||||||    |||||||||||| |||||| |||||| || ||||| || || ||||||||||||||||||||||    
T  4168002 ggtgatttgaggttcctcatgtataaggtagtgattttcacctttgggtgtatcgcatatatacggcaccttgtatttatcttttaaaaaat 4167911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 37745021 - 37744918
Alignment:
Q  14 ggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatctttt-aaaaaatttaaata 112  Q
    ||||||||||||||||||| |||| |  |||||||||||| ||||||||||||| || ||||  |  || || |||||||||||| ||||||||||||||    
T  37745021 ggtggtttgaggttcctcaagtatacggtagtgattttcacctttggatgtatcgcatatatgcgacaccttatatttatcttttaaaaaaatttaaata 37744922  T
Q  113 gaac 116  Q
    ||||    
T  37744921 gaac 37744918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 54780783 - 54780886
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| |||||| |||| | || ||||| || || |||||||||||||||||||||| |||||||||| ||| ||    
T  54780783 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 54780882  T
Q  124 tttt 127  Q
    ||||    
T  54780883 tttt 54780886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 207
Target Start/End: Complemental strand, 30507162 - 30507037
Alignment:
Q  85 tgtatttatcttttaaaaaatttaaatagaacgttgttctttt---tnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaa 181  Q
    |||||||||||||||||||||||||||||||| ||||||||||           ||| || ||||||||||| ||| |||||||||||||||||   ||     
T  30507162 tgtatttatcttttaaaaaatttaaatagaacattgttcttttaaaaaaaaaaatacatttttattttattatgggtctcttttcacttacaaaatcgag 30507063  T
Q  182 cctccggattcataggaacggccctg 207  Q
    ||||||||||| |||||||| |||||    
T  30507062 cctccggattcgtaggaacgaccctg 30507037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 4167911 - 4167843
Alignment:
Q  136 tacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggcc 204  Q
    |||||| |||||||||||||||||||||||||||||||||   || ||||||||||| || ||||||||    
T  4167911 tacgtttttattttattacgggcctcttttcacttacaaaatcgagcctccggattcgtacgaacggcc 4167843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 36362984 - 36362869
Alignment:
Q  11 gagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaa 110  Q
    |||||||||||||||||||| ||||||    ||||||||| ||  ||||| |||||  || ||||| || || |||||||||||||||||||||||||||    
T  36362984 gagggtggtttgaggttcct-atgtatatggtagtgatttccacatttgggtgtattgcatatatacggcactttgtatttatcttttaaaaaatttaaa 36362886  T
Q  111 tagaacgttgttctttt 127  Q
     ||| | ||||||||||    
T  36362885 cagagcattgttctttt 36362869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 36178664 - 36178778
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    |||||||||||||| | ||| ||||||||    ||||||||||||  ||||| |||||| || ||||| |  || |||||||||||||||||| ||||||    
T  36178664 gggagggtggtttg-gattcttcatgtataaggtagtgattttcacatttgggtgtatcgcatatatacgacaccttgtatttatcttttaaataattta 36178762  T
Q  109 aatagaacgttgttct 124  Q
    |||||||| |||||||    
T  36178763 aatagaacattgttct 36178778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 43455632 - 43455529
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| |||||| |||| | || ||||| || || || ||||||||||||||||||| |||||||||| ||| ||    
T  43455632 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctc 43455533  T
Q  124 tttt 127  Q
    ||||    
T  43455532 tttt 43455529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 47128993 - 47129096
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||| | || ||| |||| | || ||||| || || |||||||||||||||||||||| |||||||||| ||||||    
T  47128993 ggttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgttc 47129092  T
Q  124 tttt 127  Q
    ||||    
T  47129093 tttt 47129096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 11906884 - 11906822
Alignment:
Q  143 ttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccc 205  Q
    ||||||||||||||||||||||||||||| | ||| || |||||| |||| ||||||||||||    
T  11906884 ttattttattacgggcctcttttcacttatatagccgagcctccgaattcgtaggaacggccc 11906822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 207
Target Start/End: Original strand, 34027585 - 34027768
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| |||||| |||| | || ||||| |  || || ||||||||||||||||||| |||||||||| ||| |     
T  34027585 ggttcctcatgtataccgtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattgctt 34027684  T
Q  124 tttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctg 207  Q
    |||||       |||||| | ||||||| || |||||||||||| |  || ||| || |||||| |||| |||| |||||||||    
T  34027685 tttttaaaaaaatacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattcttagggacggccctg 34027768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 38209692 - 38209590
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| || ||| |||| | || ||||| || || |||||||||||||||||||||| |||||||||| ||| ||    
T  38209692 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 38209593  T
Q  124 ttt 126  Q
    |||    
T  38209592 ttt 38209590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 19498510 - 19498611
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| || |||| ||||||| |||||| |||| | ||  |||| || || || ||||||||||||||||||| |||||||||| ||| ||    
T  19498510 ggttcctcatgtatacagtagtcattttcacctttggctgtaccgca--tatacggcaccttatatttatcttttaaaaaatataaatagaacattgctc 19498607  T
Q  124 tttt 127  Q
    ||||    
T  19498608 tttt 19498611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 37777324 - 37777232
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||| |  |||| ||||||| |||||| |||| | || ||||| || || || ||||||||||||||||||| ||||||||||    
T  37777324 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaac 37777232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 54083343 - 54083239
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||| |||||||| |||| | || ||||| || || || ||||||||||||||||||| |||||||| | |||||     
T  54083343 ggttcctcatgtatacggtagtcatttttatctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagatcattgttt 54083244  T
Q  124 ttttt 128  Q
    |||||    
T  54083243 ttttt 54083239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 5893137 - 5893201
Alignment:
Q  143 ttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctg 207  Q
    |||||||||||||| |||||||||||||||| ||| || |||||  |||  ||||||||||||||    
T  5893137 ttattttattacggacctcttttcacttacagagccgagcctccaaatttgtaggaacggccctg 5893201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 11906960 - 11906904
Alignment:
Q  56 tttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaata 112  Q
    |||||||||| |||| ||||| ||||| ||||||||||||||  |||||||||||||    
T  11906960 tttggatgtaccacatatatacggtaccttgtatttatctttataaaaatttaaata 11906904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 15735156 - 15735188
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||||||||||||||||||||||    
T  15735156 ttgtatttatcttttaaaaaatttaaatagaac 15735188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 32915391 - 32915483
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||| |  || | ||||| | || ||| |||| |||| ||||| || || |||||||||||||||||||||| ||||||||||    
T  32915391 ggttcctcatgtatacggtaatcatttttacctctgggtgtaccacatatatacggcaccttgtatttatcttttaaaaaatataaatagaac 32915483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 127
Target Start/End: Complemental strand, 9578705 - 9578662
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaacgttgttctttt 127  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||    
T  9578705 ttgtatttatcttttaaaaaatataaatagaacattgctctttt 9578662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 127
Target Start/End: Original strand, 10978966 - 10979009
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaacgttgttctttt 127  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||    
T  10978966 ttgtatttatcttttaaaaaatataaatagaacattgctctttt 10979009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 34768675 - 34768572
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  || | ||||||| || ||| |||| | || ||||| || || || ||||||||||||||||||| |||||||||| ||| ||    
T  34768675 ggttcctcatgtatacggtaatcattttcacctctgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctc 34768576  T
Q  124 tttt 127  Q
    ||||    
T  34768575 tttt 34768572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 40089522 - 40089601
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaa 103  Q
    |||||||||||||| |  |||| ||||||| ||||||||||| | || ||||| || || || |||||||||||||||||    
T  40089522 ggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaa 40089601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 127
Target Start/End: Original strand, 48209306 - 48209349
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaacgttgttctttt 127  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||    
T  48209306 ttgtatttatcttttaaaaaatataaatagaacattgctctttt 48209349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 5128945 - 5128852
Alignment:
Q  22 gaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaa 115  Q
    |||||||||||||||| |  |||| ||||||| || ||| || |   || ||||| || || |||||||||||||||||||||| |||||||||    
T  5128945 gaggttcctcatgtatacggtagtcattttcacctctgggtgcactgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaa 5128852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 32128608 - 32128693
Alignment:
Q  42 tagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttctttt 127  Q
    |||| ||||||| |||||| |||| | || ||||| |  || || ||||||||||||||||||| |||||||||| ||| ||||||    
T  32128608 tagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattgctctttt 32128693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 1105598 - 1105630
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||||||||||| ||||||||||    
T  1105598 ttgtatttatcttttaaaaaatataaatagaac 1105630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 10428238 - 10428206
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||||||||||| ||||||||||    
T  10428238 ttgtatttatcttttaaaaaatataaatagaac 10428206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 13460273 - 13460305
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||||||||||| ||||||||||    
T  13460273 ttgtatttatcttttaaaaaatataaatagaac 13460305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 16922367 - 16922327
Alignment:
Q  87 tatttatcttttaaaaaatttaaatagaacgttgttctttt 127  Q
    ||||||||||||||||||| |||||||||| ||| ||||||    
T  16922367 tatttatcttttaaaaaatataaatagaacattgctctttt 16922327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 37514725 - 37514757
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||||||||||| ||||||||||    
T  37514725 ttgtatttatcttttaaaaaatataaatagaac 37514757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 21665816 - 21665618
Alignment:
Q  10 ggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaa 109  Q
    ||||||||||||| |||||||||||||| |  ||||||||||||  ||| ||||||||||| ||||| |  ||  |||||||||||||||||||||||||    
T  21665816 ggagggtggtttgtggttcctcatgtatacggtagtgattttcacattttgatgtatcacatatatacgacaccgtgtatttatcttttaaaaaatttaa 21665717  T
Q  110 atagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctgat 209  Q
    ||||||| |||||| ||||       ||| || ||||||||||||||| ||||||||||||||| ||| || ||||| ||||| |||||||  |||||||    
T  21665716 atagaacattgttc-ttttaaaaaaatacatttttattttattacgggtctcttttcacttacagagccgaccctccagattcgtaggaacaaccctgat 21665618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 24035662 - 24035496
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    |||||||||||||| | |||||||||||| |  |||||||||||| |||| | |||||| ||  |||| || || |||||||||||||||||||||||||    
T  24035662 gggagggtggtttgcgattcctcatgtatgcggtagtgattttcacctttaggtgtatcgcatttatacggcaccttgtatttatcttttaaaaaattta 24035563  T
Q  109 aatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaa 175  Q
    |||||||| ||||||||||        |||||| |||||||||||||||| ||||||||||||||||    
T  24035562 aatagaacattgttcttttaaaagaaatacgtttttattttattacgggcatcttttcacttacaaa 24035496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 38400785 - 38400975
Alignment:
Q  11 gagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaa 110  Q
    ||||||||||||||||||||||||||| |  |||||||||||| ||||| ||||||| || ||||| |  || |||||||||||||||||||||||||||    
T  38400785 gagggtggtttgaggttcctcatgtatacggtagtgattttcacctttgaatgtatcgcatatatatgacaccttgtatttatcttttaaaaaatttaaa 38400884  T
Q  111 tagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacg 201  Q
    |||||| |||||||| |        || ||| |||||||||| |||| ||||||||||||||| ||| |||| | ||||||| || |||||    
T  38400885 tagaacattgttcttataaaaaatatatgtttttattttattgcgggtctcttttcacttacagagccgaactttcggattcgtaagaacg 38400975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 16096998 - 16097185
Alignment:
Q  14 ggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatag 113  Q
    ||||||||||||||||||||||||    |||| ||||||| |||||| ||||   || ||||| || || ||||||||||||||||||||||||||||||    
T  16096998 ggtggtttgaggttcctcatgtataaggtagtaattttcacctttgggtgtacatcatatatacggcaccttgtatttatcttttaaaaaatttaaatag 16097097  T
Q  114 aacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacg 201  Q
    ||| ||||||||||        ||| |  ||||||||||||||||| ||||||||||||| ||| || |||||  |||| ||||||||    
T  16097098 aacattgttcttttaaacaaaatacatatttattttattacgggccacttttcacttacagagccgagcctccaaattcgtaggaacg 16097185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 16227485 - 16227368
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    |||||||||||||||||||||| ||||||  | ||||||||||||||| | | ||||||||| ||||| |  || |||||||||||||||||||||||||    
T  16227485 gggagggtggtttgaggttccttatgtatatagtagtgattttcatctatcggtgtatcacatatatacgacaccttgtatttatcttttaaaaaattta 16227386  T
Q  109 aatagaacgttgttcttt 126  Q
    |||||||  |||||||||    
T  16227385 aatagaaaattgttcttt 16227368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 9 - 173
Target Start/End: Complemental strand, 13800662 - 13800497
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatcttt-ggatgtatcacacatataaggtacattgtatttatcttttaaaaaattt 107  Q
    |||| |||| ||||||||||||| |||||  | |||||||||||| |||| || |||||| || ||||| || || || |||||||||||||||||||||    
T  13800662 gggaaggtgatttgaggttcctcgtgtatatagtagtgattttcaccttttgggtgtatcgcatatatacggcaccttatatttatcttttaaaaaattt 13800563  T
Q  108 aaatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttaca 173  Q
    ||||||||| |||||||||||       ||| || |||||||||||||  ||||||||||||||||    
T  13800562 aaatagaacattgttctttttaaaaaaatacatttttattttattacgaacctcttttcacttaca 13800497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 12134157 - 12134038
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    |||||||||||||||||||||| |||||| |  ||||||||||||  ||||| |||||| || ||||| ||||| ||||||||||||||||||   ||||    
T  12134157 gggagggtggtttgaggttcctaatgtatacggtagtgattttcacttttgggtgtatcgcatatatacggtaccttgtatttatcttttaaatttttta 12134058  T
Q  109 aatagaacgttgttcttttt 128  Q
    |||||||| |||||||||||    
T  12134057 aatagaacattgttcttttt 12134038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 11912874 - 11912757
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    |||||||||||||||||||||| |||||| |  |||||||||||||||||||||||||  || ||||| || || |||||||||| ||||   |||||||    
T  11912874 gggagggtggtttgaggttccttatgtatacggtagtgattttcatctttggatgtattgcatatatacggcactttgtatttatttttttttaaattta 11912775  T
Q  109 aatagaacgttgttcttt 126  Q
    |||||||| |||||||||    
T  11912774 aatagaacattgttcttt 11912757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 7742251 - 7742055
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaa-aaaattt 107  Q
    ||||| |||||||||||||||||||| || | |||||  |||||| ||||||||||| | || ||||| |  |||||||||||||||||||| ||||| |    
T  7742251 gggagagtggtttgaggttcctcatgcatacgatagtatttttcacctttggatgtaacgcatatatatgacacattgtatttatcttttaaaaaaatat 7742152  T
Q  108 aaatagaacgttgttctttt----tnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaac 200  Q
    ||||||||| ||||||||||            |  ||| ||||||||| ||||||||||||||||||||| | | |||||||||||||| |||||||    
T  7742151 aaatagaacattgttcttttaaaaaaataatatgtgtttttattttatcacgggcctcttttcacttacagaaccgaacctccggattcgtaggaac 7742055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 80 - 208
Target Start/End: Complemental strand, 22727503 - 22727375
Alignment:
Q  80 tacattgtatttatcttttaaaaaatttaaatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcag 179  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||        |||||| ||||||||||||  |||||||||||||||||  |  |    
T  22727503 tacatagtatttatcttttaaaaaatttaaatagaacattgttcttttaaaaaaaatacgtttttattttattacttgcctcttttcacttacagcgtcg 22727404  T
Q  180 aacctccggattcataggaacggccctga 208  Q
    | |||||| |||| |||||| ||||||||    
T  22727403 agcctccgaattcgtaggaatggccctga 22727375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 11952723 - 11952656
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatata 76  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||| ||  ||||||||| |||||    
T  11952723 gggagggtggtttgaggttcctcatgtatgcagtagtgattttcatctatgagtgtatcacatatata 11952656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 209
Target Start/End: Complemental strand, 27506841 - 27506657
Alignment:
Q  25 gttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttct 124  Q
    ||||||||||||| || |||| ||||| | |||||| |||| |||| ||||| || || || ||||||||||||||||||| |||||||| | ||| | |    
T  27506841 gttcctcatgtatacagtagtcatttttacctttgggtgtaccacatatatacggcaccttatatttatcttttaaaaaatataaatagatcattgcttt 27506742  T
Q  125 ttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctgat 209  Q
    ||||       |||||| | ||||||| || |||||||||||| |  || ||| || |||||| |||| |||| |||||||||||    
T  27506741 tttttaaaaaatacgttttgattttatcactggcctcttttcattctcagagccgagcctccgaattcttagggacggccctgat 27506657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 37182756 - 37182821
Alignment:
Q  136 tacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacg 201  Q
    |||||| ||||||||||||||| ||||||||||||||| ||| || ||||||||||| ||||||||    
T  37182756 tacgtttttattttattacgggtctcttttcacttacagagccgagcctccggattcttaggaacg 37182821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 6965007 - 6965110
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| || ||| |||| | || ||||| || || |||||||||||||||||||||| |||||||||| ||| ||    
T  6965007 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcactttgtatttatcttttaaaaaatataaatagaacattgctc 6965106  T
Q  124 tttt 127  Q
    ||||    
T  6965107 tttt 6965110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 12337550 - 12337447
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| || ||| |||| |||| ||||| |  || |||||||||||||||||||||| |||||||||| ||| ||    
T  12337550 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccacatatatatgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 12337451  T
Q  124 tttt 127  Q
    ||||    
T  12337450 tttt 12337447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 10762667 - 10762565
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| |||||| |||| |||| |||||  | || || ||||||||||||||||||| |||||||||| ||| ||    
T  10762667 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccacatatataccgcaccttatatttatcttttaaaaaatataaatagaacattgctc 10762568  T
Q  124 ttt 126  Q
    |||    
T  10762567 ttt 10762565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 24410437 - 24410535
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgtt 122  Q
    |||||||||||||| |  |||| ||||||| |||||| |||| | || ||||| || || || ||||||||||||||||||| |||||||||| |||||    
T  24410437 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgtt 24410535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 192
Target Start/End: Original strand, 34694013 - 34694143
Alignment:
Q  62 tgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctc 161  Q
    |||| |||| ||||| || || |||||||||||||||||||||| |||||||||| ||| ||||||        |||||| | ||||||| |||||||||    
T  34694013 tgtaccacatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaatacgttttgattttatcacgggcctc 34694112  T
Q  162 ttttcacttacaaagcagaacctccggattc 192  Q
    |||||| || || | | ||||||||| ||||    
T  34694113 ttttcatttccagatccgaacctccgaattc 34694143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 192
Target Start/End: Original strand, 34716425 - 34716555
Alignment:
Q  62 tgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctc 161  Q
    |||| |||| ||||| || || |||||||||||||||||||||| |||||||||| ||| ||||||        |||||| | ||||||| |||||||||    
T  34716425 tgtaccacatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaatacgttttgattttatcacgggcctc 34716524  T
Q  162 ttttcacttacaaagcagaacctccggattc 192  Q
    |||||| || || | | ||||||||| ||||    
T  34716525 ttttcatttccagatccgaacctccgaattc 34716555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 9046029 - 9046133
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatctttt-aaaaaatttaaatagaacgttgtt 122  Q
    |||||||||||||| |  |||| ||||||| |||||| |||| | || ||||| || || || |||||||||||| ||||||| |||||||||| |||||    
T  9046029 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaaatataaatagaacattgtt 9046128  T
Q  123 ctttt 127  Q
    |||||    
T  9046129 ctttt 9046133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 3155217 - 3155320
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| || | | |||| | || ||||| || || |||||||||||||||||||||| |||||||||| ||| ||    
T  3155217 ggttcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 3155316  T
Q  124 tttt 127  Q
    ||||    
T  3155317 tttt 3155320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 4505894 - 4505997
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||| | || ||| |||| | || ||||| || || |||||||||||||||||||||| |||||||||| ||| ||    
T  4505894 ggttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 4505993  T
Q  124 tttt 127  Q
    ||||    
T  4505994 tttt 4505997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 29939964 - 29939861
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| |||||| |||| | || ||||| |  || ||||||||||||| |||||||| |||||||||| ||| ||    
T  29939964 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttgtatttatcttgtaaaaaatataaatagaacattgctc 29939865  T
Q  124 tttt 127  Q
    ||||    
T  29939864 tttt 29939861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 42029208 - 42029247
Alignment:
Q  87 tatttatcttttaaaaaatttaaatagaacgttgttcttt 126  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  42029208 tatttatcttttaaaaaatttaaatagaacattgttcttt 42029247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 28425827 - 28425709
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    ||||||| || |||||||||||||| |||    ||||||||||||  ||||| ||||   || ||||| |  || |||||||||||||||||||  ||||    
T  28425827 gggagggaggcttgaggttcctcatatatatggtagtgattttcacatttgggtgtactgcatatatacgacaccttgtatttatcttttaaaattttta 28425728  T
Q  109 aatagaacgttgttctttt 127  Q
    |||||||| ||||||||||    
T  28425727 aatagaacattgttctttt 28425709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 204
Target Start/End: Complemental strand, 11952624 - 11952511
Alignment:
Q  90 ttatcttttaaaaaatttaaatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccgga 189  Q
    ||||||||||||||||||||||||||| |||||| |||         | ||| ||||||||||||||| ||||||||||||||| | | || ||| | ||    
T  11952624 ttatcttttaaaaaatttaaatagaacattgttc-tttaaaaaaaaaatgtttttattttattacgggtctcttttcacttacagaaccgagccttcaga 11952526  T
Q  190 ttcataggaacggcc 204  Q
    ||| |||||||||||    
T  11952525 ttcgtaggaacggcc 11952511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 12694798 - 12694847
Alignment:
Q  143 ttattttattacgggcctcttttcacttacaaagcagaacctccggattc 192  Q
    ||||||||||||||| ||||||||||||||| ||| || |||||||||||    
T  12694798 ttattttattacgggtctcttttcacttacagagccgagcctccggattc 12694847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 26716128 - 26716232
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatctttt-aaaaaatttaaatagaacgttgtt 122  Q
    |||||||||||||| |  |||| ||||||| |||||| |||| | || ||||| || || || |||||||||||| ||||||| |||||||||| ||| |    
T  26716128 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatatggcaccttatatttatcttttaaaaaaatataaatagaacattgct 26716227  T
Q  123 ctttt 127  Q
    |||||    
T  26716228 ctttt 26716232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 10252476 - 10252564
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttac 172  Q
    |||||||||||||||||||||||||||| |||| || ||||||         || ||| ||||||||||||  ||||||||||||||||    
T  10252476 ttgtatttatcttttaaaaaatttaaattgaacatttttctttaaaaaaaaatatgtttttattttattacacgcctcttttcacttac 10252564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 127
Target Start/End: Original strand, 40636198 - 40636241
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaacgttgttctttt 127  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||    
T  40636198 ttgtatttatcttttaaaaaatataaatagaacattgctctttt 40636241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 37182655 - 37182712
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtat 66  Q
    ||||||||| ||||||||||||||||||| |  ||||||||||||  ||||| |||||    
T  37182655 gggagggtgatttgaggttcctcatgtatacggtagtgattttcacttttgggtgtat 37182712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 3953066 - 3953098
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||||||||||| ||||||||||    
T  3953066 ttgtatttatcttttaaaaaatataaatagaac 3953098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 7162844 - 7162876
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||||||||||| ||||||||||    
T  7162844 ttgtatttatcttttaaaaaatataaatagaac 7162876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 8907121 - 8907089
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||||||||||| ||||||||||    
T  8907121 ttgtatttatcttttaaaaaatataaatagaac 8907089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 12134019 - 12133959
Alignment:
Q  143 ttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggc 203  Q
    |||||||||||||| |||||||||||||||| | | || |||| |||||| |||| |||||    
T  12134019 ttattttattacggacctcttttcacttacagaaccgagcctctggattcgtaggtacggc 12133959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 38547152 - 38546954
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    |||||||||||||||||||||||||||||   |||||||||||||  ||||| |||| |||| ||||| || || |||||||||||||||||||||||||    
T  38547152 gggagggtggtttgaggttcctcatgtatatgatagtgattttcacatttgggtgtaccacatatatacggcaccttgtatttatcttttaaaaaattta 38547053  T
Q  109 aatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctg 207  Q
    |||||||| ||| |||||         | | || ||||||||||||||||| |||||||||| || ||| || |||||  |||| ||||||||||||||    
T  38547052 aatagaacattgatctttaaaaaaaaattcctttttattttattacgggccccttttcacttgcagagccgatcctccaaattcgtaggaacggccctg 38546954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 39134839 - 39134638
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatc-ttttaaaaaattt 107  Q
    ||||||||||||||||||||||||||||| || |||||||| ||| |||||| |||||  || |||||  | || ||||||||||| |||||||||||||    
T  39134839 gggagggtggtttgaggttcctcatgtatacagtagtgattatcacctttgggtgtattgcatatatacagcaccttgtatttatctttttaaaaaattt 39134740  T
Q  108 aaatagaacgttgttctttt--tnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccc 205  Q
    ||||||||| ||||||||||          |||||| ||||||||||||| | ||||||||||||||  ||| || ||||||||||| ||||||||||||    
T  39134739 aaatagaacattgttcttttaaaaaaaaaatacgtttttattttattacgagtctcttttcacttacggagccgagcctccggattcgtaggaacggccc 39134640  T
Q  206 tg 207  Q
    ||    
T  39134639 tg 39134638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 204
Target Start/End: Original strand, 45758491 - 45758688
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    |||| |||||||||||||||||||||||| |  |||||||||||| |||||||||||| ||| |||||    || ||| |||||||||||||||||||||    
T  45758491 gggatggtggtttgaggttcctcatgtatacggtagtgattttcacctttggatgtataacatatatacaacaccttgcatttatcttttaaaaaattta 45758590  T
Q  109 aatagaacgttgttctttt--tnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggcc 204  Q
    |||||||| ||||||||||          ||| || |||||||||| ||| |||||||||||||||| ||| || |||| |||||| |||||||||||    
T  45758591 aatagaacattgttcttttaaaaaaaatatacatttttattttatttcggacctcttttcacttacagagccgagcctctggattcgtaggaacggcc 45758688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 10926067 - 10925908
Alignment:
Q  12 agggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaa-atttaaa 110  Q
    |||||| ||||||| ||||||||||| |  |||||||||||||||||||||| ||| || ||||| || ||||||||||||| ||||||||| | |||||    
T  10926067 agggtgatttgaggatcctcatgtatacggtagtgattttcatctttggatgcatctcatatatacggcacattgtatttattttttaaaaatacttaaa 10925968  T
Q  111 tagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcactta 171  Q
    |||||  |||||| ||||       || ||| |||||||||||||||| ||||||||||||    
T  10925967 tagaatattgttc-ttttaaaaaaataagtttttattttattacgggcttcttttcactta 10925908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 6221678 - 6221791
Alignment:
Q  12 agggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaat 111  Q
    |||||||||||||||||||||| ||| | ||| |||||||||  ||| |||||| | |  ||||| || |||||||||||||||||| ||||||||||||    
T  6221678 agggtggtttgaggttcctcatatatacgataatgattttcacattttgatgtaccgcttatatacggcacattgtatttatctttt-aaaaatttaaat 6221776  T
Q  112 agaacgttgttcttt 126  Q
    ||||| |||||||||    
T  6221777 agaacattgttcttt 6221791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 176
Target Start/End: Complemental strand, 43235886 - 43235717
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttt--taaaaaatt 106  Q
    |||| |||||||||||||||||||||||| | ||||||||||||| |||||| ||||   || ||||| |  |  ||||||||||||||   ||||||||    
T  43235886 gggatggtggtttgaggttcctcatgtatacgatagtgattttcacctttgggtgtacatcatatatacgacatcttgtatttatctttaaaaaaaaatt 43235787  T
Q  107 taaatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaag 176  Q
    |||||||||| || ||||||         ||| || |||||||||||| |||||||||||||||||||||    
T  43235786 taaatagaacatttttctttagaaaaaaatacatttttattttattacaggcctcttttcacttacaaag 43235717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 5533309 - 5533507
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatctttt-aaaaaattt 107  Q
    |||| ||||||||||| |||||||||||| |  |||||||||||| |||||  ||||   || ||||| || || |||| |||||||||| |||||||||    
T  5533309 gggatggtggtttgagtttcctcatgtatacggtagtgattttcacctttgattgtacatcatatatacggcaccttgtgtttatcttttaaaaaaattt 5533408  T
Q  108 aaatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctg 207  Q
    ||||||||  |||||| ||||       ||| || ||||||||||||||| ||||||||||||||| ||   | ||||||||||| ||| ||||| ||||    
T  5533409 aaatagaatattgttc-ttttaaaaaaatacatttttattttattacgggtctcttttcacttacagagtcaagcctccggattcgtagaaacgggcctg 5533507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 38853527 - 38853637
Alignment:
Q  16 tggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaa 115  Q
    ||||||||||||| |||||||| |  |||||||||||| |||||||| ||  ||| ||||| |  || ||||||||||| ||||||||||||||||||||    
T  38853527 tggtttgaggttc-tcatgtatacggtagtgattttcacctttggatatacaacatatatacgacaccttgtatttatcatttaaaaaatttaaatagaa 38853625  T
Q  116 cgttgttctttt 127  Q
    |  |||||||||    
T  38853626 cactgttctttt 38853637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 9173124 - 9173026
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgtt 122  Q
    |||||||||||||| |  |||| ||||||| ||||||||||| | || ||||| || || || ||||||||||||||||||| |||||||||| |||||    
T  9173124 ggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgtt 9173026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 9181106 - 9181008
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgtt 122  Q
    |||||||||||||| |  |||| ||||||| ||||||||||| | || ||||| || || || ||||||||||||||||||| |||||||||| |||||    
T  9181106 ggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgtt 9181008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 14146312 - 14146404
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||| |  |||| |||||||||| ||| |||| | || ||||| || || |||||||||||||||||||||| ||||||||||    
T  14146312 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaac 14146404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 5316692 - 5316795
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| || ||| |||| | || ||||| || || |||||||||||||||||||||| |||||||||| ||| ||    
T  5316692 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 5316791  T
Q  124 tttt 127  Q
    ||||    
T  5316792 tttt 5316795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 23185439 - 23185542
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| || ||| |||| | || ||||| || || |||||||||||||||||||||| |||||||||| ||| ||    
T  23185439 ggttcctcatgtatacggtagtcattttcacctatgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 23185538  T
Q  124 tttt 127  Q
    ||||    
T  23185539 tttt 23185542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 26803945 - 26804059
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    ||||||||||||||||||| ||||||||| |  |||||||||||| |||    |||||| || ||||| |  |  |||||||||||||||||||||||||    
T  26803945 gggagggtggtttgaggtttctcatgtatacggtagtgattttcaccttg---tgtatcgcatatatacgacatcttgtatttatcttttaaaaaattta 26804041  T
Q  109 aatagaacgttgttcttt 126  Q
    |||| | | |||||||||    
T  26804042 aatatagcattgttcttt 26804059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 4971719 - 4971617
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| |||||||  | ||| |||| | || ||||| ||||| |||||||||||||||||||||| |||||||||| ||| ||    
T  4971719 ggttcctcatgtatacggtagtcattttcacttatgggtgtaccgcatatatacggtaccttgtatttatcttttaaaaaatataaatagaacattgctc 4971620  T
Q  124 ttt 126  Q
    |||    
T  4971619 ttt 4971617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 1366979 - 1366878
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||| ||||| |  |||| |||||||||||||| |||| | || ||||| || || || ||||||||||||||||||| |||||||||| ||| ||    
T  1366979 ggttcctcgtgtatacggtagtcattttcatctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctc 1366880  T
Q  124 tt 125  Q
    ||    
T  1366879 tt 1366878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 50881440 - 50881545
Alignment:
Q  22 gaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgt 121  Q
    |||||||||||||||| |  |||| ||||||| || | |||||| | || ||||| |  || |||||||||||||||||||||| |||||||||| |||     
T  50881440 gaggttcctcatgtatactgtagtcattttcacctctagatgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgc 50881539  T
Q  122 tctttt 127  Q
    ||||||    
T  50881540 tctttt 50881545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 6889646 - 6889726
Alignment:
Q  47 attttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttctttt 127  Q
    ||||||| || |||||||| | || ||||| | ||| |||||||||||||||||||||| |||||||||| ||| ||||||    
T  6889646 attttcacctctggatgtaccgcatatatacgatactttgtatttatcttttaaaaaatataaatagaacattgctctttt 6889726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 6891492 - 6891572
Alignment:
Q  47 attttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttctttt 127  Q
    ||||||| || |||||||| | || ||||| | ||| |||||||||||||||||||||| |||||||||| ||| ||||||    
T  6891492 attttcacctctggatgtaccgcatatatacgatactttgtatttatcttttaaaaaatataaatagaacattgctctttt 6891572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 127
Target Start/End: Complemental strand, 17322668 - 17322621
Alignment:
Q  80 tacattgtatttatcttttaaaaaatttaaatagaacgttgttctttt 127  Q
    |||||||||||||||||| ||||||| |||||||||| ||||||||||    
T  17322668 tacattgtatttatctttaaaaaaatataaatagaacattgttctttt 17322621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 6771801 - 6771895
Alignment:
Q  22 gaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||| ||||| |  |||| ||||||| || ||| |||| | || ||||| || || |||||||||||||||||||||| ||||||||||    
T  6771801 gaggttcctcgtgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaac 6771895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 114
Target Start/End: Original strand, 19955729 - 19955819
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaataga 114  Q
    |||||||||| ||| |  |||| ||||||| |||||| |||| | || ||||| ||||| || ||||||||||||||||||| ||||||||    
T  19955729 ggttcctcatatatacggtagtcattttcacctttgggtgtaccgcatatatacggtaccttatatttatcttttaaaaaatataaataga 19955819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 5027579 - 5027664
Alignment:
Q  42 tagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttctttt 127  Q
    |||| ||||||| || ||| |||| | || ||||| || || |||||||||||||||||||||| |||||||||| ||| ||||||    
T  5027579 tagtcattttcacctatgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 5027664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 21741020 - 21740935
Alignment:
Q  42 tagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttctttt 127  Q
    |||| ||||||| || ||| |||||| || ||||| || || ||||||||||||||||||||||  ||||||||| ||| ||||||    
T  21741020 tagtcattttcacctctgggtgtatcgcatatatacggcaccttgtatttatcttttaaaaaatacaaatagaacattgctctttt 21740935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 17169031 - 17169152
Alignment:
Q  87 tatttatcttttaaaaaatttaaatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctcc 186  Q
    ||||||||||||||||||| |||||||||| ||| | |||||       |||||| | ||||||| || | |||||||||| || || ||| || |||||    
T  17169031 tatttatcttttaaaaaatataaatagaacattgctttttttaaaaaaatacgttttgattttatcactgacctcttttcatttccagagccgagcctcc 17169130  T
Q  187 ggattcataggaacggccctga 208  Q
    | |||| |||| ||||||||||    
T  17169131 gaattcttagggacggccctga 17169152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 27559649 - 27559741
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||| |  |||| ||||||| |||||| |||| | || ||||| |  || || ||||||||||||||||||| ||||||||||    
T  27559649 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaac 27559741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 41697238 - 41697146
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||| |  |||| |||||||  | ||||||||   || ||||| | ||| |||||||||||||||||||||| ||||||||||    
T  41697238 ggttcctcatgtatacggtagtcattttcacttctggatgtactgcatatatacgatactttgtatttatcttttaaaaaatataaatagaac 41697146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 50146307 - 50146411
Alignment:
Q  23 aggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgtt 122  Q
    |||||||||||||||    || ||||||| | |||||| | ||||||| ||| | || || ||| |||||||||| ||||| |||||||||||| |||||    
T  50146307 aggttcctcatgtatagggtaatgatttttacctttgggtctatcacatatacacggcaccttgcatttatctttcaaaaagtttaaatagaacattgtt 50146406  T
Q  123 ctttt 127  Q
    |||||    
T  50146407 ctttt 50146411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 127
Target Start/End: Complemental strand, 22865502 - 22865459
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaacgttgttctttt 127  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||    
T  22865502 ttgtatttatcttttaaaaaatataaatagaacattgctctttt 22865459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 127
Target Start/End: Original strand, 44655813 - 44655856
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaacgttgttctttt 127  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||    
T  44655813 ttgtatttatcttttaaaaaatataaatagaacattgctctttt 44655856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 35392300 - 35392384
Alignment:
Q  42 tagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttctttt 127  Q
    |||||||||||| |||||||| || | || ||||| || || |||||||||||  |||||||||||||||| ||| || |||||||    
T  35392300 tagtgattttcacctttggatataccgcatatatacggcaccttgtatttatc-cttaaaaaatttaaataaaacattattctttt 35392384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 3406490 - 3406522
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||||||||||| ||||||||||    
T  3406490 ttgtatttatcttttaaaaaatataaatagaac 3406522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 3440330 - 3440298
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||||||||||| ||||||||||    
T  3440330 ttgtatttatcttttaaaaaatataaatagaac 3440298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 16140127 - 16140159
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||||||||||| ||||||||||    
T  16140127 ttgtatttatcttttaaaaaatataaatagaac 16140159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 201
Target Start/End: Original strand, 26279529 - 26279722
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtat--tcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatt 106  Q
    |||||||||||||||||||||||||||||  |   ||||||||||||||||||| |||||  || ||||| |  || || ||||||||||||||||||||    
T  26279529 gggagggtggtttgaggttcctcatgtataatgtgtagtgattttcatctttgggtgtattgcatatatacgacaccttctatttatcttttaaaaaatt 26279628  T
Q  107 taaatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacg 201  Q
    |||||||||| |||||| ||||       |||||| |||||||| || || |||||||||||||||||||  ||||||||  |||||||||||||    
T  26279629 taaatagaacattgttc-ttttaaaaaaatacgtttttattttactatggacctcttttcacttacaaagttgaacctccaaattcataggaacg 26279722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 54574944 - 54574826
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    ||||||| |||||||||||||||||||||    |||||||||| |  ||||| |||| | || ||||| ||||| |||||||||| |||| |||||||||    
T  54574944 gggagggcggtttgaggttcctcatgtatatggtagtgatttttacttttgggtgtaccgcatatatacggtaccttgtatttatattttgaaaaattta 54574845  T
Q  109 aatagaacgttgttctttt 127  Q
    |||||||| ||||||||||    
T  54574844 aatagaacattgttctttt 54574826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 173
Target Start/End: Original strand, 25855411 - 25855574
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    |||||||||||||||||||| || ||||| |  |||||||||||| |||||| || |  ||| ||||| |  || ||||||| |||||||||||||||||    
T  25855411 gggagggtggtttgaggttcttcgtgtatacggtagtgattttcaactttgggtgcactacatatatacgacaccttgtatt-atcttttaaaaaattta 25855509  T
Q  109 aatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttaca 173  Q
    |||||||| |||||||||         ||| || |||||||||||||||||| |||||| |||||    
T  25855510 aatagaacattgttctttaaaaaaacatacatttttattttattacgggccttttttcatttaca 25855574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 8420320 - 8420433
Alignment:
Q  14 ggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatag 113  Q
    |||||||||||||||||| | ||| |   |||||||||||  ||||| ||||  ||| ||||| || || ||||||||||||||||||||||||||||||    
T  8420320 ggtggtttgaggttcctcgtatatacggcagtgattttcacatttgggtgtacaacatatatacggcaccttgtatttatcttttaaaaaatttaaatag 8420419  T
Q  114 aacgttgttctttt 127  Q
    ||| || |||||||    
T  8420420 aacattattctttt 8420433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 28689478 - 28689317
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    |||||||| ||||||| || ||||||||| |   ||||||||||| |||||||| |||| || ||||| || || |||||||||||||||  ||||||||    
T  28689478 gggagggtagtttgagatttctcatgtatacggcagtgattttcacctttggatatatcgcatatatacggcaccttgtatttatctttttgaaaattta 28689379  T
Q  109 aatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcactt 170  Q
    |||||||| || || ||||        ||  || ||||||||||||| ||||||||||||||    
T  28689378 aatagaacattctttttttaaaaaaaatatctttttattttattacgagcctcttttcactt 28689317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 84 - 208
Target Start/End: Original strand, 49393153 - 49393276
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacc 183  Q
    ||||||||||||||||||||||||||| ||||| |||||||||         ||| || ||||||||||||| | || ||||||||||| |||| || ||    
T  49393153 ttgtatttatcttttaaaaaatttaaagagaacattgttctttaaaaaaaaatacatttttattttattacgagtcttttttcacttac-aagccgagcc 49393251  T
Q  184 tccggattcataggaacggccctga 208  Q
    ||||||||| ||||||||| |||||    
T  49393252 tccggattcgtaggaacggtcctga 49393276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 203
Target Start/End: Complemental strand, 23641363 - 23641240
Alignment:
Q  81 acattgtatttatcttttaaaaaatttaaatagaacgttgttctttt-tnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcag 179  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||         |||||| ||||||||| ||||| |||||||||| |||| | | |    
T  23641363 acattgtatttatcttttaaaaaatataaatagaatgttgttcttttaaaaaaaaatacgtttttattttatcacgggtctcttttcacctacagaaccg 23641264  T
Q  180 aacctccggattcataggaacggc 203  Q
    | ||||| ||||| ||||||||||    
T  23641263 agcctccagattcgtaggaacggc 23641240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 47467688 - 47467780
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||| |  |||| ||||||| || ||| |||||| || ||||| || || |||||||||||||||||||||| ||||||||||    
T  47467688 ggttcctcatgtatacggtagtcattttcacctctgggtgtatcgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaac 47467780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 21582775 - 21582878
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| || ||| |||| | || ||||| || || |||||||||||||||||||||| |||||| ||| ||||||    
T  21582775 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaataaaacattgttc 21582874  T
Q  124 tttt 127  Q
    ||||    
T  21582875 tttt 21582878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 53506986 - 53506883
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||| ||||||||| |  |||| ||||||| |||||| |||| | || ||||| ||||| || ||||||||||||||||||| |||||||||| |||||     
T  53506986 ggtttctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggtaccttatatttatcttttaaaaaatataaatagaacattgttt 53506887  T
Q  124 tttt 127  Q
    ||||    
T  53506886 tttt 53506883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 54619305 - 54619202
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| || ||| |||| | || ||||| || || |||||||||||||||||||||| |||||||||| ||| ||    
T  54619305 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 54619206  T
Q  124 tttt 127  Q
    ||||    
T  54619205 tttt 54619202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 206
Target Start/End: Complemental strand, 3953975 - 3953816
Alignment:
Q  47 attttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttctttttnnnnnnntacgttgttat 146  Q
    ||||||| || ||| |||| | || ||||| || || |||||||||||||||||||||| |||||||||| ||||||||||        ||| || | ||    
T  3953975 attttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgttcttttaaaaaaaatacattttaat 3953876  T
Q  147 tttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccct 206  Q
    ||||| || |||||||||||| || || ||| ||||||||| ||||  ||| ||||||||    
T  3953875 tttatcactggcctcttttcatttccagagcggaacctccgaattctcagggacggccct 3953816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 37168372 - 37168474
Alignment:
Q  25 gttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttct 124  Q
    ||||||||||||| |  |||| ||||||| |||||| | || |||| ||||| || || || ||||||||||||||||||| |||||||||| ||||| |    
T  37168372 gttcctcatgtatacggtagtcattttcacctttgggtataccacatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgtttt 37168471  T
Q  125 ttt 127  Q
    |||    
T  37168472 ttt 37168474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 52374650 - 52374813
Alignment:
Q  14 ggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatag 113  Q
    |||||| |||||||| |||||||| |  |||||||||||  |||| |||||||| ||  |||| |  ||||||||||||| |   |||||||||||||||    
T  52374650 ggtggtatgaggttcttcatgtatacggtagtgattttctcctttagatgtatcgcatctatacgacacattgtatttatttaaaaaaaaatttaaatag 52374749  T
Q  114 aacgttgttctttt-tnnnnnnntacgttgttattttattacgggcctcttttcacttacaaag 176  Q
    ||| ||||||||||         |||||| ||||||||||||||   |||||||||||||||||    
T  52374750 aacattgttcttttaaaaaaaaatacgtttttattttattacggatttcttttcacttacaaag 52374813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 128
Target Start/End: Complemental strand, 54407242 - 54407156
Alignment:
Q  42 tagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttcttttt 128  Q
    |||| ||||||| ||||||||||| | || ||||| || || || ||||||||||||||||||| |||||||||| ||||| |||||    
T  54407242 tagtcattttcacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgtttttttt 54407156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 38681193 - 38681092
Alignment:
Q  26 ttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttctt 125  Q
    |||||||||||| |  |||| ||||||| || |||||||| | || | ||| || || |||||||||||||||||||||| |||||||||| ||| ||||    
T  38681193 ttcctcatgtatacggtagtcattttcacctctggatgtaccgcatacatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 38681094  T
Q  126 tt 127  Q
    ||    
T  38681093 tt 38681092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 789930 - 790042
Alignment:
Q  14 ggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatag 113  Q
    ||||||||||||||||||||||||    | |||||||| | |||||| ||||  ||| ||||| |  || ||||||||||  ||||||||||||||||||    
T  789930 ggtggtttgaggttcctcatgtatatggtggtgatttttacctttgggtgtacaacatatatatgacaccttgtatttattgtttaaaaaatttaaatag 790029  T
Q  114 aacgttgttcttt 126  Q
    ||  |||||||||    
T  790030 aagattgttcttt 790042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 32319263 - 32319155
Alignment:
Q  18 gtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacg 117  Q
    |||||||||||||| | |||   ||||| ||||||| |||||| |||| | || |||||    || |||||||||||||||||||||||||||||||||     
T  32319263 gtttgaggttcctcgtatataagatagtaattttcacctttgggtgtaccgcatatatacaacactttgtatttatcttttaaaaaatttaaatagaaca 32319164  T
Q  118 ttgttcttt 126  Q
    || ||||||    
T  32319163 ttattcttt 32319155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 34290738 - 34290635
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||| ||| |  |||| ||||||| |||||| |||| | || ||||| || || || ||||||||||||||||||| |||||||||| |||||     
T  34290738 ggttcctcatatatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgttt 34290639  T
Q  124 tttt 127  Q
    ||||    
T  34290638 tttt 34290635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 127
Target Start/End: Original strand, 42453468 - 42453511
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaacgttgttctttt 127  Q
    |||||||||||||||||||||||||||| |||| ||||||||||    
T  42453468 ttgtatttatcttttaaaaaatttaaattgaacattgttctttt 42453511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 43207339 - 43207237
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| ||||| ||||| | || ||||| || || || ||||||||||||||||||| |||||||||| ||| ||    
T  43207339 ggttcctcatgtatacggtagtcattttcacctttg-atgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctc 43207241  T
Q  124 tttt 127  Q
    ||||    
T  43207240 tttt 43207237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 8073440 - 8073348
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||| |  |||| |||||||  ||||| |||| | || ||||| |  || |||||||||||||||||||||| ||||||||||    
T  8073440 ggttcctcatgtatacggtagtcattttcacttttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaac 8073348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 44708481 - 44708573
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||| |  |||| ||||||| |||||| |||| |  | ||||| || || || ||||||||||||||||||| ||||||||||    
T  44708481 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccggatatatacggcaccttatatttatcttttaaaaaatataaatagaac 44708573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 53149416 - 53149324
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||| |  |||| ||||| |||| ||  |||| | || ||||| || || |||||||||||||||||||||| ||||||||||    
T  53149416 ggttcctcatgtatacggtagtcatttttatctctgagtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaac 53149324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 9878789 - 9878698
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaa 115  Q
    ||||||| |||||| | ||||| ||||||| |||||| |||| | || |||||  | || || ||||||||||||||||||| |||||||||    
T  9878789 ggttccttatgtatacgatagtcattttcacctttgggtgtaccgcatatatactgcaccttatatttatcttttaaaaaatataaatagaa 9878698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 127
Target Start/End: Original strand, 18372547 - 18372590
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaacgttgttctttt 127  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||    
T  18372547 ttgtatttatcttttaaaaaatataaatagaacattgctctttt 18372590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 29598097 - 29598179
Alignment:
Q  10 ggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttat 93  Q
    ||||| ||||||||| |||||||||||| |  |||||| |||||||||||  ||||||||| ||||| || || ||||||||||    
T  29598097 ggaggctggtttgagattcctcatgtatacggtagtga-tttcatctttgagtgtatcacatatatacggaaccttgtatttat 29598179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 127
Target Start/End: Complemental strand, 36716067 - 36716024
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaacgttgttctttt 127  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||    
T  36716067 ttgtatttatcttttaaaaaatataaatagaacattgctctttt 36716024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 114
Target Start/End: Complemental strand, 50939335 - 50939245
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaataga 114  Q
    |||||||||||||| |  |||| ||||| | |||||| |||| || | ||||| || || || ||||||||||||||||||| ||||||||    
T  50939335 ggttcctcatgtatacggtagtcatttttacctttgggtgtaccatatatatacggcaccttatatttatcttttaaaaaatataaataga 50939245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 52973385 - 52973435
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttg 59  Q
    ||||||||||||||| |||| ||||| || || ||||||||||||||||||    
T  52973385 gggagggtggtttgaagttcatcatgcatacagtagtgattttcatctttg 52973435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 36179540 - 36179475
Alignment:
Q  143 ttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctga 208  Q
    |||||||||||||||||||||||||||||     |  | ||||||||||| |||||||||||||||    
T  36179540 ttattttattacgggcctcttttcacttatgggaccaagcctccggattcgtaggaacggccctga 36179475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 27078611 - 27078579
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||||||||||| ||||||||||    
T  27078611 ttgtatttatcttttaaaaaatataaatagaac 27078579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 27084408 - 27084376
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||||||||||| ||||||||||    
T  27084408 ttgtatttatcttttaaaaaatataaatagaac 27084376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 42098865 - 42098897
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||||||||||| ||||||||||    
T  42098865 ttgtatttatcttttaaaaaatataaatagaac 42098897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 1346 - 1532
Alignment:
Q  15 gtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaataga 114  Q
    ||||||||||||||||||||||| | |||||||||||||  ||||| |||||  || |||||  | || || ||||||||||||||||| ||||||||||    
T  1346 gtggtttgaggttcctcatgtatacgatagtgattttcacatttgggtgtatagcatatatacagcaccttatatttatcttttaaaaattttaaataga 1445  T
Q  115 acgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacg 201  Q
    || || |||||||        |||||| |||||||||||||| | |||||||||||||| |||||| ||| | ||||| ||||||||    
T  1446 acattattcttttaaaaaaaatacgtttttattttattacggacttcttttcacttacagagcagagccttcagattcgtaggaacg 1532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 15078750 - 15078936
Alignment:
Q  15 gtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaataga 114  Q
    ||||||||||||||||||||||| | |||||||||||||  ||||| |||||  || |||||  | || || ||||||||||||||||| ||||||||||    
T  15078750 gtggtttgaggttcctcatgtatacgatagtgattttcacatttgggtgtatagcatatatacagcaccttatatttatcttttaaaaattttaaataga 15078849  T
Q  115 acgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacg 201  Q
    || || |||||||        |||||| |||||||||||||| | |||||||||||||| |||||| ||| | ||||| ||||||||    
T  15078850 acattattcttttaaaaaaaatacgtttttattttattacggacttcttttcacttacagagcagagccttcagattcgtaggaacg 15078936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 206
Target Start/End: Complemental strand, 41677290 - 41677092
Alignment:
Q  10 ggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatctttt-aaaaaattta 108  Q
    |||||||||||||||||||||||||||| || |||||||||||| |||| |||||||| || ||||| |  |  ||||||||||||||| ||||||||||    
T  41677290 ggagggtggtttgaggttcctcatgtatacagtagtgattttcacctttagatgtatcgcatatatacgacatcttgtatttatcttttaaaaaaattta 41677191  T
Q  109 aatagaacgttgttctttt-tnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccct 206  Q
    |||||||| ||||||||||         |||||| |||||||||||  || ||||||||||| ||| ||| || |||||| |||| ||||||| |||||    
T  41677190 aatagaacattgttcttttaaaaaaaaatacgtttttattttattataggtctcttttcactcacagagccgagcctccgaattcgtaggaaccgccct 41677092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 7944639 - 7944442
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    |||| |||||||||||||||||||||||| |  |||||||||||| |||||| ||||  ||| ||||| || || |||||||||| ||||||||||||||    
T  7944639 gggatggtggtttgaggttcctcatgtatacggtagtgattttcacctttgggtgtacaacatatatacggcaccttgtatttattttttaaaaaattta 7944540  T
Q  109 aatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccct 206  Q
    |||| ||| ||||||||||        ||| || |||||||||||||| |||||||||| ||||| |   || | ||| ||||| |||||||||||||    
T  7944539 aataaaacattgttcttttaaaaaaaatacatttttattttattacggacctcttttcaattacagaatcgagcttcctgattcgtaggaacggccct 7944442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 15167529 - 15167338
Alignment:
Q  12 agggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaat 111  Q
    |||||||||||||||||||||||||| | |||||||||||||  ||||| |||||| || |||||    || || |||||||||||||||||||||||||    
T  15167529 agggtggtttgaggttcctcatgtatacgatagtgattttcacatttgggtgtatcgcatatatacaacactttatatttatcttttaaaaaatttaaat 15167430  T
Q  112 agaacgttgttctttt--tnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacg 201  Q
    ||||| ||||||||||          |||||| |||||||||||||| | | |||||||||||| |||||| ||| | ||||| ||||||||    
T  15167429 agaacattgttcttttaaaaataaaatacgtttttattttattacggactttttttcacttacagagcagagccttcagattcgtaggaacg 15167338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 39332520 - 39332325
Alignment:
Q  11 gagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaa 110  Q
    ||||||||||||||||||||||||||| |  |||||||||||| ||||||||||| | |  ||||| |  || ||||||||||||||| ||||| |||||    
T  39332520 gagggtggtttgaggttcctcatgtatacggtagtgattttcacctttggatgtaccgcttatatatgacaccttgtatttatctttttaaaaaattaaa 39332421  T
Q  111 tagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctgat 209  Q
    |||||| |||||||||          || || ||||||||||||| | |||||||||| |||| | | || |||||| |||| ||||||||||||||||    
T  39332420 tagaacattgttcttt---aaaaaaaacttttttattttattacgagtctcttttcacctacagaaccgagcctccgaattcgtaggaacggccctgat 39332325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 34048823 - 34048705
Alignment:
Q  10 ggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatc--acacatataaggtacattgtatttatcttttaaaaaattt 107  Q
    |||||||||| ||||| ||||||||||| || ||||||||||||||||||| ||||||  | | ||||| |  ||||||||||||||||||||||  |||    
T  34048823 ggagggtggtatgaggatcctcatgtatacagtagtgattttcatctttgggtgtatcatatatatatacgacacattgtatttatcttttaaaatgttt 34048724  T
Q  108 aaatagaacgttgttcttt 126  Q
    ||||||||| |||||||||    
T  34048723 aaatagaacattgttcttt 34048705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 41879182 - 41879285
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||| |||||||||||  |||| ||||||| ||||||||||| | || ||||| ||||| |||||||||||||||||||||| |||||||||| ||||||    
T  41879182 ggtttctcatgtattcggtagtcattttcacctttggatgtaccgcatatatacggtaccttgtatttatcttttaaaaaatataaatagaacattgttc 41879281  T
Q  124 tttt 127  Q
    ||||    
T  41879282 tttt 41879285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 5973219 - 5973060
Alignment:
Q  14 ggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatag 113  Q
    |||||||||||||||||| ||||| |  || |||||||||||| ||| ||||  ||| ||||| |  || ||||||||||||||||||||||||||||||    
T  5973219 ggtggtttgaggttcctcgtgtatacggtaatgattttcatctatgggtgtacaacatatatacgacaccttgtatttatcttttaaaaaatttaaatag 5973120  T
Q  114 aacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttaca 173  Q
    ||| ||||||||||        ||| || |||||||||||| | |||||||||| |||||    
T  5973119 aacattgttcttttaaaacgaatacatttttattttattacagacctcttttcatttaca 5973060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 11290170 - 11290288
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    |||| |||||||||||||| ||||||||| |  |||||||||||| |||||  ||||  ||| ||||| |  || |||||||||||||||||||||||||    
T  11290170 gggatggtggtttgaggttgctcatgtatacggtagtgattttcacctttgagtgtacaacatatatacgacaccttgtatttatcttttaaaaaattta 11290269  T
Q  109 aatagaacgttgttctttt 127  Q
    |||| ||| ||||||||||    
T  11290270 aataaaacattgttctttt 11290288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 199
Target Start/End: Complemental strand, 30674485 - 30674330
Alignment:
Q  44 gtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttctttttnnnnnnntacgttgt 143  Q
    |||||||||| |||||  |||||| || ||||| |  || || |||||||||||||||| ||||||||||||| |||||||||         |||||| |    
T  30674485 gtgattttcacctttgagtgtatcgcatatatacgacaccttatatttatcttttaaaacatttaaatagaacattgttctttaaaaaaaaatacgtttt 30674386  T
Q  144 tattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaa 199  Q
    |||||||||||| ||||||||||||||||| ||| || ||||| ||||| ||||||    
T  30674385 tattttattacgagcctcttttcacttacagagccgagcctccagattcgtaggaa 30674330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 23941208 - 23941095
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    ||||||||||||||||||||||| | |||   || ||||||||||||||||| |||||| |  ||||| |  || |||||||||||||||||||||||||    
T  23941208 gggagggtggtttgaggttcctcgtatatatgattgtgattttcatctttgggtgtatcgcttatatatgacaccttgtatttatcttttaaaaaattta 23941109  T
Q  109 aatagaacgttgtt 122  Q
    |||| ||| |||||    
T  23941108 aataaaacattgtt 23941095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 5942682 - 5942777
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaa 104  Q
    ||||||||||||||||||||||||||||| |  |||||||||||| |||||| |||| | |||||||| |  |  |||||||||||||||||||||    
T  5942682 gggagggtggtttgaggttcctcatgtatacggtagtgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaaa 5942777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 2952323 - 2952219
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| |||||||||| ||| |||| | || ||||| || || |||||||||||||||||||||| |||||||||| ||| ||    
T  2952323 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcactttgtatttatcttttaaaaaatataaatagaacattgctc 2952224  T
Q  124 ttttt 128  Q
    |||||    
T  2952223 ttttt 2952219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 5721545 - 5721652
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    |||||||||||||||||||||||| |||| |  ||||||||||||  ||||| |||| |    ||||| || || ||||||||||||||||||||| |||    
T  5721545 gggagggtggtttgaggttcctcaggtatacggtagtgattttcacttttgggtgtaccgattatatagggcaccttgtatttatcttttaaaaaaatta 5721644  T
Q  109 aatagaac 116  Q
    ||||||||    
T  5721645 aatagaac 5721652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 30883330 - 30883433
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| || ||| |||| | || ||||| || ||||||||||||||||||||||||| |||||||||| ||| ||    
T  30883330 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcacattgtatttatcttttaaaaaatataaatagaacattgctc 30883429  T
Q  124 tttt 127  Q
    ||||    
T  30883430 tttt 30883433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 8646201 - 8646355
Alignment:
Q  18 gtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacg 117  Q
    |||||||||| || |||||| |  ||||||||||||  ||||  |||||  || ||||| | ||| |||||||||||||||||||||||||||||||||     
T  8646201 gtttgaggtttcttatgtatacggtagtgattttcacatttgcgtgtatg-catatatacgataccttgtatttatcttttaaaaaatttaaatagaaca 8646299  T
Q  118 ttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttaca 173  Q
    ||||||||||        |||||| ||||||||||| ||  ||||||| |||||||    
T  8646300 ttgttcttttaaaaaaattacgtttttattttattaaggatctcttttgacttaca 8646355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 207
Target Start/End: Complemental strand, 38009191 - 38009070
Alignment:
Q  87 tatttatcttttaaaaaatttaaatagaacgttgttctttttnnnnnnntac-gttgttattttattacgggcctcttttcacttacaaagcagaacctc 185  Q
    ||||||||||||||||| |||||||||||| ||||||||||         |  ||| |||||||||||||| | |||||||| ||||| | | || ||||    
T  38009191 tatttatcttttaaaaattttaaatagaacattgttcttttaaaaaaaaaaaagtttttattttattacggacttcttttcagttacagaaccgagcctc 38009092  T
Q  186 cggattcataggaacggccctg 207  Q
    ||||||||||||||||||||||    
T  38009091 cggattcataggaacggccctg 38009070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 8102906 - 8103001
Alignment:
Q  17 ggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaata 112  Q
    ||||||||||||||||||||| |  || ||||||||| |||| | |||| | || |||||  | || |||||||||||||||||||||||||||||    
T  8102906 ggtttgaggttcctcatgtatacggtaatgattttcacctttaggtgtaccgcatatatactgcaccttgtatttatcttttaaaaaatttaaata 8103001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 45475818 - 45475921
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| || ||| |||| | || ||||| || || |||||||||||||||||||||| |||||||||| ||| ||    
T  45475818 ggttcctcatgtatacggtagtcattttcacctatgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 45475917  T
Q  124 tttt 127  Q
    ||||    
T  45475918 tttt 45475921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 9108554 - 9108596
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaacgttgttcttt 126  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  9108554 ttgtatttatcttttaaaaaatttaaatagaacattgttcttt 9108596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 114
Target Start/End: Original strand, 42600783 - 42600873
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaataga 114  Q
    |||||||||||||| |  |||| ||||||| |||||| |||| |||| ||||| || || || ||||||||||||||||||| ||||||||    
T  42600783 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccacatatatacggcaccttatatttatcttttaaaaaatataaataga 42600873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 25561607 - 25561496
Alignment:
Q  12 agggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaat 111  Q
    |||||||||||||||||||||||||| |   |||||||||||  ||||| | |||| || ||||| || || ||||||||||| ||||||| ||||||||    
T  25561607 agggtggtttgaggttcctcatgtatacggcagtgattttcacatttgggt-tatcgcatatatacggcaccttgtatttatc-tttaaaagatttaaat 25561510  T
Q  112 agaacgttgttctt 125  Q
    ||||| || |||||    
T  25561509 agaacattattctt 25561496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 23606731 - 23606546
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||| | |||||| |||| | || ||||| || || || ||||||||||||||||||| |||||||||| ||| ||    
T  23606731 ggttcctcatgtatacggtagtcatttttacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctc 23606632  T
Q  124 tttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctgat 209  Q
    ||||        |||||| | ||||||| || || ||||||||| |  || ||| || |||||| |||| |||| |||||||||||    
T  23606631 ttttaaaaaaaatacgttttgattttatcactggtctcttttcattcccagagccgagcctccgaattcttagggacggccctgat 23606546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 171
Target Start/End: Complemental strand, 34789974 - 34789817
Alignment:
Q  14 ggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatag 113  Q
    ||||||||||  || ||||||||| |  |||||||||||| |||||| ||||  ||| ||||| |  |  ||||||||||||||||| | ||||||||||    
T  34789974 ggtggtttgatatttctcatgtatacggtagtgattttcacctttgggtgtacaacatatatacgacatcttgtatttatcttttaagagatttaaatag 34789875  T
Q  114 aacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcactta 171  Q
    ||| | ||||||||        ||| || |||||||||||||| ||| ||||||||||    
T  34789874 aacatcgttcttttaaaaaaaatacatttttattttattacggaccttttttcactta 34789817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 13534788 - 13534686
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| || ||| |||| | || ||||| || || |||||||||||||||||||||| |||||||||| ||| ||    
T  13534788 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcac-ttgtatttatcttttaaaaaatataaatagaacattgctc 13534690  T
Q  124 tttt 127  Q
    ||||    
T  13534689 tttt 13534686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 13624328 - 13624226
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| || ||| |||| | || ||||| || || |||||||||||||||||||||| |||||||||| ||| ||    
T  13624328 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcac-ttgtatttatcttttaaaaaatataaatagaacattgctc 13624230  T
Q  124 tttt 127  Q
    ||||    
T  13624229 tttt 13624226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 10917392 - 10917535
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    ||||||||||||||    |||| ||||||| |||||| |||| | || ||||| || || || ||||||||||||||||||| |||||||| | |||||     
T  10917392 ggttcctcatgtataaggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagatcattgttt 10917491  T
Q  124 tttttnnnnnnntacgttgttattttattacgggcctcttttca 167  Q
    |||||       |||||| | ||||||| || ||||||||||||    
T  10917492 tttttaaaaaaatacgttttgattttatcactggcctcttttca 10917535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 23798363 - 23798261
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| |||||||  ||||| |||| | || ||||| || || || ||||||||||||||||||| |||||||||| ||| ||    
T  23798363 ggttcctcatgtatacggtagtcattttcacttttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctc 23798264  T
Q  124 ttt 126  Q
    |||    
T  23798263 ttt 23798261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 126
Target Start/End: Complemental strand, 34868219 - 34868177
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaacgttgttcttt 126  Q
    ||||||||||||||||||||||||||||||||| || ||||||    
T  34868219 ttgtatttatcttttaaaaaatttaaatagaacattattcttt 34868177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 5860828 - 5860744
Alignment:
Q  42 tagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttcttt 126  Q
    |||| ||||||| || ||| |||| | || ||||| || || |||||||||||||||||||||| |||||||||| ||| |||||    
T  5860828 tagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 5860744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 3048619 - 3048530
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatag 113  Q
    |||||||| ||||| |  |||| |||||||||| | | |||| | || ||||| || || |||||||||||||||||||||| |||||||    
T  3048619 ggttcctcgtgtatacggtagtcattttcatctctaggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatag 3048530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 37430200 - 37430168
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||||||||||| ||||||||||    
T  37430200 ttgtatttatcttttaaaaaatataaatagaac 37430168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 21183788 - 21183686
Alignment:
Q  13 gggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaata 112  Q
    ||||||||||||||||||||||||| |  |||||||||||| |||||| |||| |||| ||||| | ||| |||||||||||||||||||||||||||||    
T  21183788 gggtggtttgaggttcctcatgtatacggtagtgattttcaactttgggtgtaccacatatatacgctactttgtatttatcttttaaaaaatttaaata 21183689  T
Q  113 gaa 115  Q
    |||    
T  21183688 gaa 21183686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 2477701 - 2477508
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    ||||||||||||||||||||||||||||| |  ||||||||||||  ||| | |||||| || ||||| |  || |||||||||||||||||||||||||    
T  2477701 gggagggtggtttgaggttcctcatgtatacggtagtgattttcacattttggtgtatcgcatatatatgtcaccttgtatttatcttttaaaaaattta 2477602  T
Q  109 aatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggc 203  Q
    ||| |||| ||||||  |||       |||  | ||||||||||||||| ||||||||||||||| | | || ||||| ||||  ||||||||||    
T  2477601 aattgaacattgttc-gtttaaaaaaatacaatcttattttattacgggtctcttttcacttacagaaccgagcctccagatttgtaggaacggc 2477508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 20611779 - 20611977
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    |||||||| |||||||||||||||||||| |  |||||||||||| |||||||||| ||  | ||||| |  || ||||||||||| |||||||||||||    
T  20611779 gggagggtagtttgaggttcctcatgtatacggtagtgattttcacctttggatgtgtcgtatatatacgacaccttgtatttatcgtttaaaaaattta 20611878  T
Q  109 aatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctga 208  Q
    | |||||| |  || | ||         ||||| ||||||| ||| ||||||||||||||||||| ||| || |||||| |||| |||||||| ||||||    
T  20611879 agtagaacat--ttatcttgaaaaaaaaacgtttttatttttttatgggcctcttttcacttacagagccgagcctccgaattcgtaggaacgaccctga 20611976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 6159430 - 6159541
Alignment:
Q  12 agggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaat 111  Q
    ||||||||||||||||||| || ||| |  ||||||||| || ||||| ||||| | || ||||| |  ||||||||||||||||||||||||| |||||    
T  6159430 agggtggtttgaggttccttatatatacggtagtgatttccacctttgaatgtaccgcatatatacgacacattgtatttatcttttaaaaaatataaat 6159529  T
Q  112 agaacgttgttc 123  Q
    ||||| ||||||    
T  6159530 agaacattgttc 6159541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 30121784 - 30121868
Alignment:
Q  42 tagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttcttt 126  Q
    |||||||||||| ||||||||||||| || ||||| |  || |||||||||| |||||||||||||||||| ||| |||||||||    
T  30121784 tagtgattttcacctttggatgtatcgcatatatatgacaccttgtatttattttttaaaaaatttaaataaaacattgttcttt 30121868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 28075787 - 28075879
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||| |  |||| ||||||| |||||| |||||| || ||||| || || || ||||||||||||||||||| ||||||||||    
T  28075787 ggttcctcatgtatacggtagtcattttcacctttgggtgtatcgcatatatacggcaccttatatttatcttttaaaaaatataaatagaac 28075879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 13727501 - 13727398
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| || ||| |||| | || ||||| || || |||||||||||||||||||||| |||||||||| ||| ||    
T  13727501 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 13727402  T
Q  124 tttt 127  Q
    ||||    
T  13727401 tttt 13727398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 20711822 - 20711719
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| |||||| |||| | || ||||| || || || ||||||||||||||||||| |||||||||| ||| ||    
T  20711822 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctc 20711723  T
Q  124 tttt 127  Q
    ||||    
T  20711722 tttt 20711719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 21479498 - 21479601
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| || ||| |||| | || ||||| || || |||||||||||||||||||||| |||||||||| ||| ||    
T  21479498 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctc 21479597  T
Q  124 tttt 127  Q
    ||||    
T  21479598 tttt 21479601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 24711101 - 24711009
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||| |  |||| ||||||| || ||  |||| |||| ||||| || || |||||||||||||||||||||| ||||||||||    
T  24711101 ggttcctcatgtatacggtagtcattttcacctctgagtgtaccacatatatacggcaccttgtatttatcttttaaaaaatataaatagaac 24711009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 27788790 - 27788606
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| |||||| |||| | || ||||| || || || ||||||||||||||||||| |||||||||  ||| ||    
T  27788790 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaaaattgctc 27788691  T
Q  124 tttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctgat 209  Q
     ||||       |||||| | ||||||| || |||||||||||| |  || ||| || |||||| |||| |||| |||||||||||    
T  27788690 -ttttaaaaaaatacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattcttagggacggccctgat 27788606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 33774121 - 33774213
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||| |  |||| |||||||  ||||| |||| | || ||||| || || |||||||||||||||||||||| ||||||||||    
T  33774121 ggttcctcatgtatacggtagtcattttcacatttgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaac 33774213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 1155947 - 1155849
Alignment:
Q  28 cctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttcttt 126  Q
    |||||||||| |  |||| ||||||| || |||||||| | || ||||| |  || |||||||||||||||||||||| |||||||||| ||| |||||    
T  1155947 cctcatgtatacggtagtcattttcacctctggatgtaccgcatatatatgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 1155849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 21280550 - 21280652
Alignment:
Q  25 gttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttct 124  Q
    ||||||||||||| |  |||| ||||| | || ||| |||| | || ||||| || || |||||||||||||||||||||| |||||||||| ||| |||    
T  21280550 gttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctct 21280649  T
Q  125 ttt 127  Q
    |||    
T  21280650 ttt 21280652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 34397859 - 34397964
Alignment:
Q  22 gaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgt 121  Q
    |||||||||||||| | | ||||| ||||| | |||| | |||| | || ||||| |  || |||||||||||||||||||||| |||||||||| |||     
T  34397859 gaggttcctcatgtttacgatagtcatttttacctttaggtgtaccgcatatatacgtcaccttgtatttatcttttaaaaaatataaatagaacattgc 34397958  T
Q  122 tctttt 127  Q
    ||||||    
T  34397959 tctttt 34397964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 30832626 - 30832534
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    ||||||||||| || |  |||| |||||||||| ||| |||| |||| ||||| || |  |||||||||| ||||||||||| ||||||||||    
T  30832626 ggttcctcatgcatacggtagtcattttcatctctgggtgtaccacatatatacggcatcttgtatttattttttaaaaaatgtaaatagaac 30832534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 19737794 - 19737691
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| || | | |||| | || ||||| || || |||||||||||||| ||||||| |||||||||| ||| ||    
T  19737794 ggttcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacggcaccttgtatttatctttaaaaaaatataaatagaacattgctc 19737695  T
Q  124 tttt 127  Q
    ||||    
T  19737694 tttt 19737691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 4036938 - 4037031
Alignment:
Q  10 ggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaa 103  Q
    |||||||||||||| ||||||||| ||| |  ||||||| || | |||||| |||| || | ||||| || || |||||||||||| |||||||    
T  4036938 ggagggtggtttgaagttcctcatatatacggtagtgatctttacctttgggtgtaccatatatatacggcaccttgtatttatctcttaaaaa 4037031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 17353958 - 17354050
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    ||||| |||||||| | ||||| |||||||  ||||| |||| | || ||||| |  || || ||||||||||||||||||| ||||||||||    
T  17353958 ggttcatcatgtatacgatagtcattttcacatttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaac 17354050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1590 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 191
Target Start/End: Complemental strand, 375 - 193
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    |||||||||||||||||||| |||||||| |  ||||||||||||  ||||| |||| | || ||||| |  || |||||||||||||||||||||||||    
T  375 gggagggtggtttgaggttcatcatgtatacggtagtgattttcacatttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaattta 276  T
Q  109 aatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggatt 191  Q
    |||||||| ||||||||||        ||| || ||||||||||| |||||||| ||||||| || ||| || |||| |||||    
T  275 aatagaacattgttcttttaataaaaatacatttttattttattatgggcctctattcacttgcagagccgagcctctggatt 193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 173627 - 173515
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    |||||| ||||||||||||||||| |||| |  |||||||||| | |||||| |||||| || ||||| ||||| |||||||||||||||||||||||||    
T  173627 gggaggatggtttgaggttcctcacgtatacggtagtgatttttacctttgggtgtatcgcatatatacggtaccttgtatttatcttttaaaaaattta 173528  T
Q  109 aatagaacgttgt 121  Q
    |||||||| ||||    
T  173527 aatagaacattgt 173515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 40071 - 40272
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatctttt--aaaaaatt 106  Q
    |||| |||||||||||||| ||||||||| | || |||||||||| ||| || ||||  ||| | ||| || || |||||||||||||||  |||||| |    
T  40071 gggacggtggtttgaggttgctcatgtatacgattgtgattttcaccttagggtgtacaacataaatacggcaccttgtatttatcttttaaaaaaaaat 40170  T
Q  107 taaatagaacgttgttcttttt-nnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccc 205  Q
    |||||||||| |||||||||||        ||| || |||||||||||||  |||||||||||||||| |||||||||||| |||||| |||| || |||    
T  40171 taaatagaacattgttctttttaaaaaaaatacatttttattttattacgaacctcttttcacttacagagcagaacctccagattcacaggatcgaccc 40270  T
Q  206 tg 207  Q
    ||    
T  40271 tg 40272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 138131 - 138332
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatctttt--aaaaaatt 106  Q
    |||| |||||||||||||| ||||||||| | || |||||||||| ||| || ||||  ||| | ||| || || |||||||||||||||  |||||| |    
T  138131 gggacggtggtttgaggttgctcatgtatacgattgtgattttcaccttagggtgtacaacataaatacggcaccttgtatttatcttttaaaaaaaaat 138230  T
Q  107 taaatagaacgttgttcttttt-nnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccc 205  Q
    |||||||||| |||||||||||        ||| || |||||||||||||  |||||||||||||||| |||||||||||| |||||| |||| || |||    
T  138231 taaatagaacattgttctttttaaaaaaaatacatttttattttattacgaacctcttttcacttacagagcagaacctccagattcacaggatcgaccc 138330  T
Q  206 tg 207  Q
    ||    
T  138331 tg 138332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 230976 - 230778
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    ||||||||||||||| |||||||||||||    |||||||||||| |||||| | |||| || |||||    || ||  ||||||||||||| |||||||    
T  230976 gggagggtggtttgaagttcctcatgtataaggtagtgattttcacctttgggtatatcgcatatatacaacaccttaaatttatcttttaacaaattta 230877  T
Q  109 aatagaacgttgttctttttnnnnnnntacgttgttattttattacgggcctcttttcacttacaaagcagaacctccggattcataggaacggccctga 208  Q
    |||||||| ||||||||||        ||| || ||  |||||||||||||||||||| |||||| | | || | ||||||||| |||||||||||||||    
T  230876 aatagaacattgttcttttaaaaaatatacattttt--tttattacgggcctcttttcccttacagatccgagcttccggattcgtaggaacggccctga 230779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 38914 - 39024
Alignment:
Q  12 agggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaat 111  Q
    |||||||||||||||||||||| ||| |  ||||||||||||  ||||  |||||| || ||||| |  || ||||||||||||||||||||||||||||    
T  38914 agggtggtttgaggttcctcatatatacggtagtgattttcacatttgtgtgtatcgcatatatacgacaccttgtatttatcttttaaaaaatttaaat 39013  T
Q  112 agaacgttgtt 122  Q
    ||||| |||||    
T  39014 agaacattgtt 39024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 206597 - 206489
Alignment:
Q  18 gtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacg 117  Q
    |||||||||||||||||||| |  |||||||||||| | |||| |||| | || ||||| |  || |||||||||||||||| ||||||||||||||||     
T  206597 gtttgaggttcctcatgtatacggtagtgattttcaccattgggtgtaccgcatatatacgacaccttgtatttatcttttacaaaatttaaatagaaca 206498  T
Q  118 ttgttcttt 126  Q
    || ||||||    
T  206497 ttcttcttt 206489  T

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Target: scaffold0182 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 24110 - 23993
Alignment:
Q  9 gggagggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaattta 108  Q
    |||||||||||||||| ||||| ||| || |  || |||||||||  ||||| |||| | || ||||| |  || |||||||||||||||||||||||||    
T  24110 gggagggtggtttgagattccttatgcatacggtaatgattttcacttttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaattta 24011  T
Q  109 aatagaacgttgttcttt 126  Q
    |||||||  |||||||||    
T  24010 aatagaatattgttcttt 23993  T

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Target: scaffold0039 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 106539 - 106642
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacgttgttc 123  Q
    |||||||||||||| |  |||| ||||||| |||||| |||| | || ||||| |  || || ||||||||||||||||||| |||||||||| ||||||    
T  106539 ggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattgttc 106638  T
Q  124 tttt 127  Q
    ||||    
T  106639 tttt 106642  T

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Target: scaffold0227 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 16016 - 16069
Alignment:
Q  12 agggtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgta 65  Q
    |||||||||||||||| ||||||||| |  ||||||||||||||||||||||||    
T  16016 agggtggtttgaggtttctcatgtatacggtagtgattttcatctttggatgta 16069  T

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Target: scaffold0227; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 16126 - 16158
Alignment:
Q  84 ttgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||||||||||||||||||||||    
T  16126 ttgtatttatcttttaaaaaatttaaatagaac 16158  T

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Target: scaffold0070 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 1344 - 1436
Alignment:
Q  24 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||||||||||| |  |||| |||||||||| ||| |||| | || ||||| || |  |||||||||||||||||||||| ||||||||||    
T  1344 ggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcagcttgtatttatcttttaaaaaatataaatagaac 1436  T

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Target: scaffold0003 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 350319 - 350269
Alignment:
Q  15 gtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgta 65  Q
    |||||||||||| ||||||||||||| ||| |||||||| |||||||||||    
T  350319 gtggtttgaggtacctcatgtattcagtagcgattttcacctttggatgta 350269  T

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Target: scaffold0003; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 351445 - 351360
Alignment:
Q  15 gtggtttgaggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaa 100  Q
    |||||||||||| |||| |||||||| ||| |||||||| |||||| ||||  ||| ||||| |  || |||||||||||||||||    
T  351445 gtggtttgaggtacctcgtgtattcagtagcgattttcacctttgggtgtacaacatatatacgacaccttgtatttatcttttaa 351360  T

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Target: scaffold0001 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 183102 - 183153
Alignment:
Q  65 atcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaac 116  Q
    |||||| ||||| | ||| |||||||||||||||||||||| ||||||||||    
T  183102 atcacatatatacgatactttgtatttatcttttaaaaaatataaatagaac 183153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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