View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9677_low_41 (Length: 226)
Name: NF9677_low_41
Description: NF9677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9677_low_41 |
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| [»] scaffold0691 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 2838773 - 2838576
Alignment:
| Q |
19 |
ggcacgaccctcgactgtcttcccttttcattgaagaaacagaaattgtaggatttgaaggcccaagagaagaaatatatggttggttattggagggtgc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2838773 |
ggcacgaccctcgactgtcttcccttttcattgaagaaacagaaattgtaggatttgaaggcccaagagaagaaatatatggttggttattggagggtgc |
2838674 |
T |
|
| Q |
119 |
agttgagcgcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgaaagccaaaaggtaacaccaaact |
216 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2838673 |
agctgagcgcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgaaagccaaaaggtaacagcaaact |
2838576 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 27 - 209
Target Start/End: Original strand, 2818530 - 2818712
Alignment:
| Q |
27 |
cctcgactgtcttcccttttcattgaagaaacagaaattgtaggatttgaaggcccaagagaagaaatatatggttggttattggagggtgcagttgagc |
126 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
2818530 |
cctcgactgtcttctcttttcattgaagaaacagaaatcgtaggatttgaaggcccgagagaagaactatatggttggttattggagggtgcagccgagc |
2818629 |
T |
|
| Q |
127 |
gcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgaaagccaaaaggtaaca |
209 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2818630 |
gcacagtgatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgacagccaaaaggtaaca |
2818712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 27 - 209
Target Start/End: Original strand, 2759187 - 2759369
Alignment:
| Q |
27 |
cctcgactgtcttcccttttcattgaagaaacagaaattgtaggatttgaaggcccaagagaagaaatatatggttggttattggagggtgcagttgagc |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| ||| | |
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| T |
2759187 |
cctcgactgtcttcccttttcattgaagaaacagaaattgtaggatttgaaggcccaaaagaagaactatatggttggttattggagggttcagctgaac |
2759286 |
T |
|
| Q |
127 |
gcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgaaagccaaaaggtaaca |
209 |
Q |
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||||||| || ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2759287 |
gcacagtgatttcagtggtaggaatggggggtctcggcaaaaccactcttgccaagctagtttttgacagccaaaaggtaaca |
2759369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 34 - 208
Target Start/End: Original strand, 2769049 - 2769223
Alignment:
| Q |
34 |
tgtcttcccttttcattgaagaaacagaaattgtaggatttgaaggcccaagagaagaaatatatggttggttattggagggtgcagttgagcgcacagt |
133 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| | |||||||||| |
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| T |
2769049 |
tgtcttccctctttattgaagaaacagaaattgtaggattggaaggcccaagagaagaattatttggttggttattggagggtgcagctaagcgcacagt |
2769148 |
T |
|
| Q |
134 |
catatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgaaagccaaaaggtaac |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||| |
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| T |
2769149 |
gatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaaactagtttatgacagccaaaaggtaac |
2769223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 27 - 209
Target Start/End: Original strand, 2807240 - 2807422
Alignment:
| Q |
27 |
cctcgactgtcttcccttttcattgaagaaacagaaattgtaggatttgaaggcccaagagaagaaatatatggttggttattggagggtgcagttgagc |
126 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| | || ||||||||||||||||| || ||||| |
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| T |
2807240 |
cctcgactgtcttccctttttattgaagaaagagaaattgtaggatttgaattcccaagagaagaaatgtctgtttggttattggagggtgtagctgagc |
2807339 |
T |
|
| Q |
127 |
gcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgaaagccaaaaggtaaca |
209 |
Q |
| |
|
|||| || || || |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
2807340 |
gcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatagccaaacggtaaca |
2807422 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 27 - 206
Target Start/End: Original strand, 5412859 - 5413038
Alignment:
| Q |
27 |
cctcgactgtcttcccttttcattgaagaaacagaaattgtaggatttgaaggcccaagagaagaaatatatggttggttattggagggtgcagttgagc |
126 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||| |||||||| ||||||| |||| ||||||| | | ||||||||||||||| ||||||| || | |
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| T |
5412859 |
cctcgactgtcttccctattcattacagaaacagaagttgtaggaattgaaggtccaaaagaagaattgtctggttggttattggatggtgcagcggaac |
5412958 |
T |
|
| Q |
127 |
gcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgaaagccaaaaggta |
206 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5412959 |
gtacagtcatatcagtggtaggaatggggggcctaggaaaaaccactcttgccaagctagtttttgaaagccaaaaggta |
5413038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 27 - 216
Target Start/End: Complemental strand, 2855975 - 2855786
Alignment:
| Q |
27 |
cctcgactgtcttcccttttcattgaagaaacagaaattgtaggatttgaaggcccaagagaagaaatatatggttggttattggagggtgcagttgagc |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||| | | ||||||||||||||| ||| | ||||| |
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| T |
2855975 |
cctcgactgtcttcccttttcattgaagaaacagaagttgtaggcattgaaggcccaaaagaagaattgtctggttggttattggaaggtatatctgagc |
2855876 |
T |
|
| Q |
127 |
gcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgaaagccaaaaggtaacaccaaact |
216 |
Q |
| |
|
||| ||| || |||||||| |||||||||||| |||||||||| ||||||||||||||| ||||||| ||||||||||||||| |||||| |
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| T |
2855875 |
gcaaagtgatttcagtggtgggaatggggggtataggaaaaactactcttgccaagctaatttttgacagccaaaaggtaacaacaaact |
2855786 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 27 - 206
Target Start/End: Original strand, 2748968 - 2749147
Alignment:
| Q |
27 |
cctcgactgtcttcccttttcattgaagaaacagaaattgtaggatttgaaggcccaagagaagaaatatatggttggttattggagggtgcagttgagc |
126 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||| |||| || |||||| ||||| ||||||| | | ||||||||||||||| |||| || ||||| |
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|
| T |
2748968 |
cctcgactgtcttctctttttattgaagaaacagaagttgttggtattgaagtcccaaaagaagaactgtctggttggttattggatggtgaagctgagc |
2749067 |
T |
|
| Q |
127 |
gcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgaaagccaaaaggta |
206 |
Q |
| |
|
|||| || ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2749068 |
gcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaaaaaggta |
2749147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 27 - 214
Target Start/End: Original strand, 2797334 - 2797521
Alignment:
| Q |
27 |
cctcgactgtcttcccttttcattgaagaaacagaaattgtaggatttgaaggcccaagagaagaaatatatggttggttattggagggtgcagttgagc |
126 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| | |||||| |||||||||||||| || |||||| | | |||||||||| | ||||| ||| ||||| |
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|
| T |
2797334 |
cctcgactgtcttccctttttattgaagaaactgcaattgtcggatttgaaggcccgagggaagaattgtctggttggttactagagggcacagctgagc |
2797433 |
T |
|
| Q |
127 |
gcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgaaagccaaaaggtaacaccaaa |
214 |
Q |
| |
|
||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| |||| |
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| T |
2797434 |
gcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgccaagctagttttcgacagtcaaaaggtaacaacaaa |
2797521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 178
Target Start/End: Original strand, 2790347 - 2790491
Alignment:
| Q |
34 |
tgtcttcccttttcattgaagaaacagaaattgtaggatttgaaggcccaagagaagaaatatatggttggttattggagggtgcagttgagcgcacagt |
133 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| |||||||||||||| || |||||| | | |||||||||||||||||| ||| |||||||||||| |
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|
| T |
2790347 |
tgtcttcccttttcattgaagaaactgcaattgtcggatttgaaggcccgagggaagaattgtctggttggttattggagggcacagctgagcgcacagt |
2790446 |
T |
|
| Q |
134 |
catatcagtggtaggaatggggggtctaggaaaaaccactcttgc |
178 |
Q |
| |
|
|| |||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
2790447 |
gatttcagtggttggaatgggaggtctaggaaaaaccactcttgc |
2790491 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 22648590 - 22648533
Alignment:
| Q |
123 |
gagcgcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgcca |
180 |
Q |
| |
|
|||||||| ||||| || |||||||| ||||| || |||||||||||||||||||||| |
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|
| T |
22648590 |
gagcgcactgtcatctctgtggtaggtatgggagggctaggaaaaaccactcttgcca |
22648533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 21945676 - 21945728
Alignment:
| Q |
141 |
gtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttga |
193 |
Q |
| |
|
|||||||||||||| || | ||||||||||||||| |||||| ||||||||| |
|
|
| T |
21945676 |
gtggtaggaatgggagggcaaggaaaaaccactctagccaagaaagtttttga |
21945728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 27 - 209
Target Start/End: Complemental strand, 6317 - 6135
Alignment:
| Q |
27 |
cctcgactgtcttcccttttcattgaagaaacagaaattgtaggatttgaaggcccaagagaagaaatatatggttggttattggagggtgcagttgagc |
126 |
Q |
| |
|
|||||| | ||| ||||||| ||||||||||| ||| |||||||||| |||||||||||||| ||| |||||||||||||||||||| || ||| ||||| |
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| T |
6317 |
cctcgattatctgccctttttattgaagaaactgaagttgtaggattcgaaggcccaagagaggaattatatggttggttattggagagtccagctgagc |
6218 |
T |
|
| Q |
127 |
gcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgaaagccaaaaggtaaca |
209 |
Q |
| |
|
|||| || || ||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
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| T |
6217 |
gcaccgtaatttcagtggtaggaatgggaggtatagggaaaaccactcttgccaagctagtttttgacagccaaaaggtaaca |
6135 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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