View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9677_low_5 (Length: 462)
Name: NF9677_low_5
Description: NF9677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9677_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 157 - 448
Target Start/End: Original strand, 30870197 - 30870495
Alignment:
| Q |
157 |
aaaaatatataaaaaagttaaatttaatgaatccacatta------gttagttagaaaatgttgatatgtgcagcttgaattttctttacacatttttta |
250 |
Q |
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| T |
30870197 |
aaaaatatataaaaaagttaaatttaatgagtccacattactattagttagttagaaaatgttgatatgtgcagcttgaattttctttacacatttttta |
30870296 |
T |
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| Q |
251 |
aaaagtatttataatacagaatat--atatattgacgtataattatactataatcaagtaatctgtgcacccgagcatgttgctgctgcacgcaaatgga |
348 |
Q |
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| T |
30870297 |
aaaagtatttataatacagaatatatatatattgacgtataattatactataatcaagtaatccgtgcacccgagcatgttgctgctgcacgcaaatgga |
30870396 |
T |
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| Q |
349 |
cagcaggtgcaagctgatacgcatctgcagctagccttgcaccagcaccattcgaatgcaggtactgtcacgcagcagtggctgccaccgagccttggga |
448 |
Q |
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| T |
30870397 |
cagcagttgcaagctgatacgcatctgcagctagccttgcacaagcaccattcgaattcaggtactgtcacgcagca-tggctgcgaccgagccttggga |
30870495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 76 - 161
Target Start/End: Original strand, 30869930 - 30870015
Alignment:
| Q |
76 |
accttatatgaataatattttgtagtttaggttagttgagatataaagtctcaacaagggacatccaatataaatttgtataaaaa |
161 |
Q |
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| T |
30869930 |
accttatatgaatgatattttgtagtttaggttagttgagatataaagtctcaacaagggacatccaatataaatttgtataaaaa |
30870015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 30869861 - 30869896
Alignment:
| Q |
12 |
ttatactattatgcataaaaaatactgatattttgt |
47 |
Q |
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| T |
30869861 |
ttatactattatgcataaaaaatactgatattttgt |
30869896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 374 - 449
Target Start/End: Original strand, 9530143 - 9530218
Alignment:
| Q |
374 |
tgcagctagccttgcaccagcaccattcgaatgcaggtactgtcacgcagcagtggctgccaccgagccttgggag |
449 |
Q |
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| T |
9530143 |
tgcagcaagccttgctccgacaccattcgcattcaggtactgtgacgcatgagttgctgccaccgagccttgggag |
9530218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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